Yimella sp. cx-51: J5M86_02560
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Entry
J5M86_02560 CDS
T07124
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J5M86_02560
09124 Replication and repair
03420 Nucleotide excision repair
J5M86_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yim03021
]
J5M86_02560
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_02560
Enzymes [BR:
yim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5M86_02560
Transcription machinery [BR:
yim03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J5M86_02560
DNA repair and recombination proteins [BR:
yim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J5M86_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QTH38565
LinkDB
All DBs
Position
complement(522677..524410)
Genome browser
AA seq
577 aa
AA seq
DB search
MNATRRLDRSYASGLWNPGRRPRVGPDVPTDVSGPLIVQSDKTVLLEVDHPLAREARAAI
APFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVRYSRYPVPNALLIDLAETM
DRYGRLTLRKQDVGGEQRLVLASTDRAVLAEVLRHKKIQPLVGDKLDEDTVLVHASERGA
IKQQLIKLGWPAEDEAGYVDGEAHPIELDTNGWSMREYQEHAVAGFWHGGSGVVVLPCGA
GKTIVGAGAMAKSRTTTLILVTNTVSARQWKDELLRRTSLTEDEIGEYSGARKEIRPVTI
ATYQVLTLKRKGVHPHLELLDARDWGLIVYDEVHLLPAPIFRMTADLQARRRLGLTATLV
REDGREEDVFSLIGPKRFDAPWKEIEAQGYIAPADCVEVRVTLTESERLAYATTEPDERY
RFSSCAPQKDRVVERIVERHRGEPTLVIGQYLDQLDALAGRLNADLITGETSVAVRQKLF
QQFRDGEISLLVVSKVANFSIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPKGDGRTAH
FYTVVTRDTVDADFAAHRQRFLAEQGYAYRIVDADDI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgacacgccgactcgaccgttcatatgcgtccggtctgtggaatcccggtcgg
cgtccgcgcgttgggcctgacgtgcctaccgacgtatccggacccctcatcgtccagagc
gacaagaccgtgttgctcgaggtcgatcacccgctcgcgcgcgaagcgcgggcggcgatt
gcgccgttcgccgagttggagcgggcccccgagcacatccacacctatcgagtgaccccg
ctcggcctgtggaacgctcgcgccgccggtcacgacgccgagcaggtggtcgacgcgctg
gtgcgctacagccgctaccccgtgccgaacgcattgctcatcgacctcgccgagacgatg
gaccgctacgggcggctcaccctgcgcaagcaggacgtcggcggcgaacaacggctggtg
ctcgccagcaccgaccgggccgttctcgcagaagtcttacggcacaagaagatccagccc
ctcgtcggagacaagctggacgaagacaccgtgctggtgcacgcgtccgaacggggtgcg
atcaagcagcagctgatcaaactcggctggccggccgaggacgaagccgggtacgtcgac
ggtgaagcccacccgattgaattggacaccaacggctggtcgatgcgcgaataccaggag
cacgcggtcgcgggtttctggcacggcggttccggcgtcgtggtgctgccctgtggcgcc
ggcaagaccatcgtcggcgcaggtgcgatggccaagtcgcgcaccaccacgctgatcctg
gtgaccaacaccgtcagcgcgcggcagtggaaggacgaactgctgcgccgcacctcgctg
acggaggacgagatcggcgagtacagcggcgcgcgcaaggagatccggcccgtcactatc
gccacctaccaagtgctcaccctcaagcgaaagggcgtgcatccgcatctcgaactgctc
gacgcccgcgactggggcctgatcgtctacgacgaggtgcacctgctgcccgcaccgatc
ttccggatgaccgccgacctgcaggcccgccggcgcctcggactcacggcgaccctcgta
cgcgaagatggccgcgaggaagacgtcttcagcctcatcggccccaaacgcttcgatgct
ccgtggaaggagatcgaggcgcagggctacattgcgccggccgactgcgtcgaagtacgt
gtcactttgaccgaaagtgagcggctcgcgtacgcgacaaccgagccggacgagcgctac
cgcttctcctcctgcgccccgcagaaagaccgcgtggtcgaacgcatcgtggaacgccat
cgcggcgaaccgaccctggtgatcgggcagtacctcgaccaacttgacgcactcgccggc
cgactgaacgccgacctcatcaccggcgagacctcagtcgctgtccggcagaagctcttt
cagcagttccgggacggtgaaatcagcctgctggtggtcagcaaggtggccaatttctcg
atcgacctgcccgaagccagcgtcgcgatccaggtgtcgggcaccttcggctcacgacaa
gaagaagctcaacgactcggacgcgtactgcgccccaagggcgacggccgcaccgcgcac
ttctacaccgtcgtcacccgcgacaccgtggacgccgacttcgccgcccaccggcagcgg
ttcctggccgagcagggctacgcctaccgaatcgtcgatgcagacgacatctga
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