Yimella sp. cx-51: J5M86_03625
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Entry
J5M86_03625 CDS
T07124
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03420
Nucleotide excision repair
yim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5M86_03625 (pcrA)
03430 Mismatch repair
J5M86_03625 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_03625 (pcrA)
Enzymes [BR:
yim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5M86_03625 (pcrA)
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5M86_03625 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
J5M86_03625 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
AAA_30
Viral_helicase1
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
QTH38740
LinkDB
All DBs
Position
758752..761166
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AA seq
804 aa
AA seq
DB search
MSSLFDDLPLPGLTPESAAPHRSPGTTTEVDEHGVPTWASLGQDAPEQPRERPNRPTMRD
PESLVEGLNPQQKEAVLHSGSPLLIVAGAGSGKTRVLTHRIAHLMGARGVQPGQILAITF
TNKAAAEMRERVQALVGPAAKSMWVSTFHSACVRILRREATKVGLKSTFSIYDAADSQRM
MAMVMRDLDLDPKRYPPRSFSHQVSNLKNELVDEETFSSRAGDNPQERTLAEAYTMYQRR
LRQANALDFDDLIMTTVHVLQAFPDVAEHYHRRFRHVLVDEYQDTNHAQYQLVKELVGSG
TDDPAVGQVPPAELCVVGDADQSIYAFRGATIRNIIEFEEDYPNARTILLEQNYRSTQTI
LQAANSVIEKNPDRRPKNLWTDSGDGDRIVGYVADSEHDEAAFVARTIDQLGDDHGVKPM
DVAVFYRTNAQSRALEEVFVRVGLPYKVVGGTRFYERREVKDALAYLRVVSNPLDTVNLR
RILNTPKRGIGDRAEACVSALAERERITFIAALGRAEDAPGIATRSVAAIGNFTAILEAL
RIERETGNGVASLLEVILDTSGYLAELRASHDPQDETRIENLAELVAVAREFDEAYPEGS
LEDFLEQVSLVADADEIPDGDENDKGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRAL
GDPKELEEERRLAYVGITRARERLHISRAEVRSAWGAPQYNPPSRFLDEIPSHLIDWARV
QTTGMRPSSTPAVARLAARPGVKSPGNHPIPSLDAGDKVSSDSFGLGTVVRLEGSGDRTI
AHIDFGGDYGVKRLALRYGKVEKL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccttttcgacgaccttcccctgcccggcctgacgcctgaatcggccgccccg
catcgatcgcccggcaccaccaccgaggtcgacgagcacggtgtccccacgtgggccagc
ctcggccaggacgcgcccgagcagccccgcgagcgaccgaaccgtccgacgatgcgcgat
ccggagtcgctggtcgaagggctcaacccgcagcagaaggaagcggtgctgcattcgggc
tcgccgctgctgatcgtcgccggtgcagggtcgggcaagacccgcgtgctcacccaccgc
atcgctcacctgatgggtgctcggggcgtacagccggggcagatcctcgcgatcaccttc
accaacaaggccgccgccgagatgcgcgagcgggtgcaagcgctcgtcggtccggcagcg
aagtcgatgtgggtctccaccttccactccgcgtgcgtgcgcatcctgcggcgtgaggcg
acgaaggtggggctgaagtcgaccttctccatctacgatgccgccgacagccagcggatg
atggcgatggtcatgcgcgacctcgacctcgatccgaagcgttacccgccgcggtcgttc
agccaccaggtgagcaacctcaagaacgaactggtcgacgaggagaccttctccagtcgc
gccggcgacaacccgcaggagcggacgcttgccgaggcgtacacgatgtaccagcgccgg
ttgcggcaggcgaatgcgctcgacttcgacgacctcatcatgacgaccgtccatgtgctg
caggcgtttccggacgtcgccgagcactaccaccgtcggttccggcacgtgttggtcgat
gagtatcaagacaccaaccacgcgcagtaccaactggtgaaggagctggtcggctcgggc
acggacgatccggcggtcggtcaggtgccgccggccgagttgtgcgtcgtcggtgacgcc
gaccagtcgatctatgccttccgcggcgcgacgatccgcaacatcatcgagttcgaagag
gactaccccaacgcccgcaccatcctgctggagcagaactatcgctccacccagacgatt
ctgcaggccgccaactcggtcatcgagaagaatcccgaccgacgtccgaagaacctctgg
accgactccggcgacggcgatcgcatcgtcggttatgtggctgattccgagcacgacgag
gccgccttcgtcgcacgcaccatcgaccaactcggtgacgaccacggggtgaagccgatg
gacgtcgcggtgttctaccgcaccaatgcgcagtcgcgtgcgctcgaagaagtgtttgtg
cgagttggcttgccctacaaggtggttggcggcacccgcttctacgagcggcgcgaggtg
aaggacgcgctggcctacctgcgcgtcgtgtccaacccgctcgacaccgtcaacctgcgc
cgcatcctcaacactcccaaacggggtatcggcgaccgcgcggaggcctgcgtctccgca
ctggccgaacgcgaacgcatcactttcatcgcggctctcggacgcgcggaggacgctccg
ggcattgccacgcgttcagtggctgcgatcggcaacttcaccgcgatcctggaagcgctg
cggatcgagcgggagaccggcaacggcgtcgccagcttgctggaggtcatcctcgacacg
tcgggctatcttgccgagctgcgcgccagccacgacccgcaggacgagacccgcatcgag
aacctcgccgaactcgtcgctgtcgcaagggaattcgatgaggcctaccccgaagggtcg
ctcgaagacttcctcgagcaggtttcgctcgtcgccgacgccgacgagatccccgatggt
gacgagaacgacaagggtgtcgtcaccctgatgacgctgcacaccgccaagggcctggag
ttcccggtggtctttctcaccggcatggaagacggcaccttcccgcacatgagagcgctg
ggcgacccgaaggagttggaggaggagcgccggctggcctacgtcggcatcacgcgtgcc
cgcgagcggctgcacatctcgcgggctgaggtgcgctcggcctggggtgcgccgcagtac
aacccgccctcacgcttcctggacgagattccctcccacctcatcgactgggcgcgggtg
cagaccaccggcatgcgcccctcgtccactccggctgttgcgcgattggctgcccgccca
ggcgtgaagagccccggcaaccacccgattccctcgctcgacgcgggcgacaaggtgagc
agcgattccttcggtctgggcaccgtcgtccgcctcgaaggctcgggcgaccgcaccatc
gcccacatcgacttcggcggcgactacggcgtcaagcggctcgcgctgcgatacggcaag
gtcgagaagctttag
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