Yimella sp. cx-51: J5M86_05530
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Entry
J5M86_05530 CDS
T07124
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5M86_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yim03019
]
J5M86_05530
03009 Ribosome biogenesis [BR:
yim03009
]
J5M86_05530
Enzymes [BR:
yim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J5M86_05530
Messenger RNA biogenesis [BR:
yim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J5M86_05530
Ribosome biogenesis [BR:
yim03009
]
Prokaryotic type
rRNA processing factors
J5M86_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PIN-TPR-GreABC
Motif
Other DBs
NCBI-ProteinID:
QTH39085
LinkDB
All DBs
Position
1172518..1175199
Genome browser
AA seq
893 aa
AA seq
DB search
MGPQHDEPGNLFSEPVIEQQPAAQDGADAASPAPALQAPMSFGLLFQTPDLQVRAPRRSS
VEEQRAQLDDNTDDASQESDDSSDQGDDNDEQSSGNRSRRRGGRGRRTRNDNADSSDSSG
NSDNSGKAGDSGADRQTADGGKTETGDADDASKSGESDRSGDDDSDDDGDSGDAGSRRRT
RRRRRSGSGPDSDDPPGTVTKVREPRPQRDEVTAIKGSTRLEAKKQRRREGREAGRRRTS
ITEAEFLARRESVDRVMVVRERDGRTQIGVLEDGILVEHYVSRETQQASMAGNVYLGRVQ
NVLPSMEAAFVDIGRGRNAVLYAGEVNWDAAGLDNQPKRIEHALSSGESVLVQVTKDPIG
HKGARLTSQISLPGRFLVYVPGNAMTGISRKLPDNERARLKKILKEIVPADAGVIVRTAA
EGASEEDLKADIERLQKTWEQIQKKSKTASAPSLLHGEPDLTLRVIRDVFNEDFSKLVVA
GDKAWDDVSGYIGSIAPDLEPRLEKWTGETDLFTVHRVDEQLAKALDRKVWLPSGGSLVI
DRTEAMTVIDVNTGKFVGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVVDFIDMVL
ESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLLEIFSEPCVHCDGRGV
IVHGAPVEKSGGNNGGGSSQQSNSGNSSGQNGGSGNRKSRRGRRGDDAAEQQHQPSGPTA
AQIAAAAHAAANKKAEAAAESESDEESAAGADVSADQAPAAVTESVVADAPEQKSHQPAS
TKAEPPAEVTVEPEVVAPAIPVVEPPAPRRRGSRRAGSPSVAPTSAPEPVEVPKTVVAGE
VKAAEAADSTAASASPSPQGPAAAAPTRRRPRRARVVSPAGPPANLDEPTPDR
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgggcccccagcacgacgaacccggcaatcttttctccgaaccggtcatcgaacagcaa
ccggccgcgcaggatggcgccgacgcagcatcacccgcgccggcactccaagcaccgatg
tccttcgggctgcttttccagacccctgatctccaggtgcgggcgccccggcgttcaagc
gtggaggaacagcgtgcgcagttggacgacaacaccgacgacgcatcgcaggagtcggac
gacagcagcgaccagggcgacgacaacgacgagcagagcagtggcaaccgctcccgtcgc
cgcggcggccgcggccgccgcacccgcaacgacaacgcagacagttcggacagctcgggc
aactcggacaactcgggcaaggccggtgactccggtgccgaccggcagacggccgacggc
ggcaagaccgagaccggtgacgctgacgatgcctcgaagtccggtgagtccgaccgctca
ggcgatgacgactccgacgacgacggcgactccggcgatgcagggagccgccgccgcacc
cgccgccgtcggcgcagcggaagcggtcccgacagcgacgacccgcccggcaccgtcacc
aaggtgcgcgaaccgcgtccgcagcgtgacgaggtcaccgccatcaagggctccacccgt
ctggaagccaagaagcagcgacgccgggagggccgcgaggccggacgccgtcgcacctcg
atcaccgaggccgagttcctcgcccgccgcgagagcgttgatcgcgtcatggtggtgcgt
gagcgtgacggccgcacccagatcggtgtgctcgaggacggcatcctcgtcgagcactac
gtttcccgcgagacccagcaggcctcaatggcgggcaatgtgtacctcggtcgggtgcag
aacgtcctgccgagcatggaagccgccttcgtcgacatcggtcgcggacgcaacgccgtg
ctctacgccggtgaggtcaactgggacgccgcgggcctggacaaccagcccaagcgcatc
gagcacgctctgtcctcgggcgagagtgtgctggtgcaggtgaccaaggaccccatcggt
cacaagggcgcccgcctcacctcgcagatctcgctgccgggtcgattcctggtctacgtg
ccgggcaacgccatgacgggaatctcccgcaagctgcctgacaacgagcgtgcgcgactg
aagaagatcctcaaggagatcgtgccggccgacgccggtgtgatcgtccgcaccgccgcg
gagggcgccagcgaggaagacctcaaggctgacatcgagcgcctgcagaagacgtgggag
cagatccagaagaagagcaagaccgcctcggcgccctcgctgctgcacggcgagcccgac
ctcacgctgcgggtgatccgcgatgtcttcaacgaagacttcagcaaactggtcgtcgcc
ggtgacaaggcatgggacgacgtctcgggctacatcggaagcatcgcgcccgacctggag
ccgcggctggagaagtggaccggcgagaccgacctgttcaccgtgcaccgcgtcgacgag
cagctggccaaagccctcgaccgcaaggtctggctgccctccggcggttcgctggtcatc
gaccgcaccgaggcgatgacggtcatcgacgtcaacaccggcaagttcgtcggctccggc
ggcaacctcgaggaaaccgtcacccgcaacaacctggaagcagccgaggagatcgtccgg
cagctgcgcctgcgcgacatcggcggcatcgttgtcgtcgacttcatcgacatggtgttg
gagtcgaaccgcgacctggtcgtccgccgactgttggagtgcctgggccgcgaccgcacc
aagcaccaggtcgccgaggtcacctcgctcgggttggtgcagatgacccgtaagcgggtc
ggcagcggactgttggagatcttctccgagccctgcgtgcactgcgacgggcgaggcgtg
atcgtgcacggtgcaccggtcgagaagtccggcggcaacaacggtggcgggtcgtcccag
cagagcaacagcggcaacagcagcggtcagaatggcggctcgggcaaccgtaagagccgg
cgtggacgccgcggtgacgacgccgctgagcaacagcatcagccgtccggtccgaccgcc
gctcagatcgccgccgccgcccacgcggcagccaacaagaaggccgaagcggcagctgag
tccgagtccgacgaggagtcggctgccggggcggatgtctcggcagatcaggctccggcg
gcagtgaccgagtcggtcgtcgccgatgcgcccgagcagaagtcgcaccagccggcgagc
acgaaagccgagccgccggccgaagtcaccgtcgagcccgaggtcgtcgcaccggcgatc
ccggtcgtcgaaccgcccgcccccaggcgtcgtggttcgcgtcgtgcgggttcgccctcg
gtcgcacccaccagtgcgcctgagcccgtcgaggtgcccaagacggtcgtcgcgggtgag
gtcaaggcagccgaagccgccgactccaccgcggccagtgcatcgccgtctccgcagggg
cctgcagccgcggcgcccacgcgccgtcgtccccggcgggcccgtgtggtctcgccggcc
ggccctccggcgaatttggacgagcccacacccgaccggtaa
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