Yimella sp. cx-51: J5M86_07230
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Entry
J5M86_07230 CDS
T07124
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5M86_07230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yim03019
]
J5M86_07230
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_07230
Enzymes [BR:
yim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5M86_07230
Messenger RNA biogenesis [BR:
yim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5M86_07230
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J5M86_07230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QTH39378
LinkDB
All DBs
Position
1527934..1530045
Genome browser
AA seq
703 aa
AA seq
DB search
MPTDSSSEAHDAALQNAVTRVLTALAGPDAALREGQLEALEELAKPGSRVLVVQATGWGK
SAVYWIATSMMRDRGDGPTLVVSPLLSLMRDQVAAAERAGLVAATLNSSNIDAWSQIEAD
LAADRIDVLLVSPERLANPGFGARVMESLAGRLGMAVVDEAHAVSDWGHDFRPDYRRVVD
VLGTLNPQTPVLATTATANERVVEDVAAQLGSHTLVLRGPLARSSLTLAVTPPMDPLARF
AWVADHLAQLPGAGIIYTLTVSDAHRLAEVLRQRHGDDPALRTAAYTGALDGAEREQLED
ALRRNELKALVATSALGMGYDKPDLGFVVHVGAPPSPVSYYQQVGRAGRAIDHALVALLP
SASDEAVWDYFATATIPKPAEVERLLALLADADAPISVPTLEAESGIRRGRVELMLKQLA
VDAVVERSTQGWTATGKEWSYDQAHFDSVLATRRREADIMRRYVRGQGCLMQLLQESLDD
PSAAPCGRCSVCRSELPDGLKATADPETMRGVRRVLRTERHMLEPRKMWPGGAFGTRGKI
PASLAADAGRVLVHADAPEWLDQLGGCLADGSAADTELLEHAVRTLADWSKTWADRPTCV
ISLAATGQTALTESVAAHLATAGRLPHASWPIRPVPTDLTGADEAAQWREQLAGEPPADV
TAHTVVLVIDRSSSGWVASVATAALRQAGAARVLPLVIHRTVG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgccgacagattcttcgtccgaagcgcacgacgctgccctgcagaatgccgtcacccgc
gtcctgacagcgctggccgggcctgatgccgccctgcgcgagggtcagctggaggcactg
gaagaactagccaaacccggctcgcgcgtgttggtcgtccaggccaccgggtggggcaaa
tcggcggtctactggatcgccacctcgatgatgcgtgatcggggcgacggtcccacactc
gtcgtctcgcccctgttgtcgctgatgcgtgaccaagtggccgctgctgagcgggccggt
cttgtggcggcgacgctcaactcctcaaacatcgacgcgtggtcacagatcgaggccgac
ctcgctgccgatcgcatcgacgtgctgttggtgtcacccgaacgtctggccaaccctggc
ttcggtgcgcgggtcatggagagtctcgccggccgactcggcatggcggtggtcgacgag
gcccacgcggtgagcgactggggccatgacttccgtcccgactaccggcgcgttgtcgat
gtgctcggcaccctcaaccctcagacgccagtgctggccaccaccgcgacggcgaacgag
cgcgtcgtggaagacgttgcagcacaactgggttcgcacaccctcgtgctgcgcgggccg
ctggcgcggtctagcctcacgcttgccgtcacgcctccgatggacccgttggcgcggttc
gcgtgggtggccgatcatctcgcgcagttgccgggcgcgggcatcatctacaccctcacc
gtctccgacgcacaccgcctggcggaggtgttgcgacagcgtcatggtgacgatccagcg
ctgcgcaccgccgcatacaccggtgcgctcgacggcgctgagcgcgagcagctcgaggac
gctctgcgccgcaacgaactcaaggcactggtcgccacctctgcgctcggcatgggctac
gacaagcccgatctcggtttcgtggtgcacgtcggcgcgccaccgtcgcccgtgtcgtac
taccagcaggtcgggcgtgccggccgagcgatcgatcacgcgttggtcgcgctgctcccg
tcggcctccgacgaagccgtctgggactacttcgccacggcaaccattcccaaaccagct
gaggtcgagcgactgttggcgctgctggccgatgccgacgcaccgatctccgtgccgacg
ctcgaagccgaatcaggcatcaggcgcggccgcgtggagttgatgttgaagcagctcgcc
gtcgacgcagtggtcgaacgctccacccaaggctggacggctaccggcaaggagtggagt
tacgaccaggcccacttcgactccgtcctggccacccgccgccgtgaagctgacatcatg
cgccggtacgtgcgagggcagggctgcttgatgcaactgctgcaggagtcgctcgacgat
ccttccgcggcgccgtgcggtcggtgctcggtgtgccgatcggagctgccggacggcctg
aaagccacggctgatcccgagacgatgcgcggagtgcgacgagtgctgcgcaccgaacgt
cacatgctcgaaccccgcaagatgtggcccggtggtgcattcggcacccgcggcaagatc
ccggcgtcgctggccgctgatgcggggcgagtgctggtgcacgccgatgcgcccgagtgg
ctcgaccagctcggtgggtgcctggctgacggcagcgccgccgacaccgaactgctcgaa
cacgcggtgcggactctcgccgactggagcaagacctgggccgatcgtccgacatgtgtg
atttctcttgccgccacagggcagacggcgctcaccgaatcggtcgctgctcacctcgcc
acggccggacgcctgccgcatgcatcctggccgatcaggccggtgcccaccgatctcacc
ggcgctgacgaggctgctcagtggcgcgaacagttggccggggagccacccgcagatgtc
accgcccacacggtcgtgctggtgatcgaccgcagctcctccggctgggtggcgtccgtc
gccaccgcggcgctgcgccaggcgggtgccgctcgagtgcttccgctggtgatccatcgc
accgtcggctga
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