Yimella sp. cx-51: J5M86_08900
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Entry
J5M86_08900 CDS
T07124
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03030
DNA replication
yim03430
Mismatch repair
yim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5M86_08900
03430 Mismatch repair
J5M86_08900
03440 Homologous recombination
J5M86_08900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yim03032
]
J5M86_08900
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_08900
Enzymes [BR:
yim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J5M86_08900
DNA replication proteins [BR:
yim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J5M86_08900
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J5M86_08900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
UVR
DEDDh_C
Rv2179c-like
SPOR
RNase_H_2
DUF7508
Motif
Other DBs
NCBI-ProteinID:
QTH37038
LinkDB
All DBs
Position
1859805..1861538
Genome browser
AA seq
577 aa
AA seq
DB search
MSSPAFNSPVAVQGTLDDLGTPLSEVTFVVLDLETTGGAASGAGITEIGAVKVRGGQVIG
EFQTLVRPGEPIPAFVSVLTGISNAMVSSSPRIGAVLPPLLDFLEGCVLVAHNAPYDVGF
LKAACRDTHAQWPRPTVIDTAHLARQLVTKDEAPNRKLGSLARLFGASTTPDHRALHDAQ
ATVDVLHALLERVGNLGVHTLEELQTYSKTVTPQQRRKRVLADGLPAAPGVYAFKDFRGE
VLYVGTSVDIKRRVRSYFTESEKRRRMRDMVQLAEQVTPIVCQTALEAQVRELRLIAEHK
PRFNRRSRYPERAVWLKLTDEPFPRLSVVNTVRTDSSIYAGPFASKSAAEQAMTALHDVI
PLRQCTKRLSTKSSSSTACVLYDLGRCGAPCIGEQSVDDYALVADEAARFLTEDARPVVE
RLTDRMHSLSRDDRYEDAAEVRDRLMSFVRGAARSQRIAPLASASEVVAARPGAAGGWEI
VCVRYGRFAGTTLTPRGADPMPYVKAMCDTAEVVAAPVAPAPAALPEETEKVLHWLEQPG
VRIVHADIVWTCPVNGAGASRSQLETLMDGASDKVRM
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcccgccttcaattcgcccgtcgcggtgcagggcacgctggacgacctcggc
accccgctgtccgaggtcaccttcgtcgtgctcgacctcgagaccaccggcggcgcggcg
agcggggcgggcatcaccgagatcggcgcggtgaaggtgcgcggtggtcaggtgatcggt
gaattccagaccctcgtccgtcccggcgaacccatcccggccttcgtgtcggtgctgacc
ggcatcagcaacgcgatggtgtcgtcatccccgcgcatcggcgccgtgctgccacccctg
ctcgatttcctcgaaggctgcgtgctggtggctcacaacgccccctacgacgtcggattt
ctcaaagcagcctgccgcgacacccacgcccagtggccccggccgaccgtcatcgacacc
gcgcatctggcccgccaactggtgaccaaggacgaagcccccaaccgcaaactcgggtca
cttgctcgcctcttcggcgcctcgaccacccccgatcaccgcgcactgcacgatgcgcaa
gcgaccgtcgacgtcctgcacgcgttgctggaacgggtgggcaacctcggtgtgcacacg
cttgaggaattgcagacctacagcaagaccgtcaccccgcagcagcggcgcaagcgcgtg
ctcgccgatggcctgcccgcggcgccgggcgtctacgccttcaaggatttccgcggagaa
gtgctctacgtcggcacctccgtcgacatcaagcggcgggtccgcagctacttcaccgag
agcgagaagcgccgtcgcatgcgtgacatggtgcagctcgccgagcaggtgacaccgatc
gtctgtcagacggccctggaggcgcaagtgcgggaactgcgcctcatcgccgaacacaag
ccgcgcttcaaccggcgatctcgctaccccgagcgtgcggtctggttgaagctcaccgat
gaacccttcccccgattgtcggtcgtcaacacggtgcgcaccgactcctccatctacgcc
ggcccgttcgcctccaagtcagcagccgagcaagcgatgaccgccctgcacgacgtcatc
ccgctgcggcagtgcaccaagcggctgtcgaccaagagctcgtcgtcgacggcgtgcgtg
ctctacgacctcgggcgctgcggcgcaccgtgcatcggcgagcagagcgtcgacgactac
gcactggtggcagacgaagcagcgcgattcctcaccgaggacgcacggccagtggtcgag
aggctcaccgatcgcatgcactccctgagccgggacgatcgctacgaggatgccgccgag
gtgcgcgaccggctgatgtccttcgtgcgcggagctgccaggtcgcagcgcatcgcgcca
ctggcgagtgcatcggaggtcgtcgcggctcgcccgggcgcagccggtggttgggagatc
gtctgtgttcgctacggccgcttcgcgggcaccaccctcaccccgcgtggcgccgacccg
atgccctatgtcaaggccatgtgtgacacagcggaggtggtcgcggcgcccgtcgcaccc
gctcctgcagcgctgccggaagaaaccgagaaggtgctgcactggctcgaacaacccggc
gtgcgcatcgtccatgcagacatcgtgtggacctgccccgtcaacggtgccggtgcctcg
cgcagccaactcgagacgctcatggacggcgccagcgataaggtgaggatgtga
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