Yimella sp. cx-51: J5M86_09420
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Entry
J5M86_09420 CDS
T07124
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03030
DNA replication
yim03430
Mismatch repair
yim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5M86_09420 (holA)
03430 Mismatch repair
J5M86_09420 (holA)
03440 Homologous recombination
J5M86_09420 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yim03032
]
J5M86_09420 (holA)
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_09420 (holA)
Enzymes [BR:
yim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J5M86_09420 (holA)
DNA replication proteins [BR:
yim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J5M86_09420 (holA)
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J5M86_09420 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_gamma3
K1-lyase_Rider
Motif
Other DBs
NCBI-ProteinID:
QTH37127
LinkDB
All DBs
Position
complement(1977464..1978423)
Genome browser
AA seq
319 aa
AA seq
DB search
MTAVPPLVLIIGPEQLLADRAVRSTIDLVRETEPDAEVVRIEAAAYEPGELMLHTSPSLF
GGLKIVVLRGLDEAGDALLDEVVALAKAPAEGSVLIVAHKGGNRGKRALDALKKGGARLI
DAPAIKSDRDKSAFVTNEFRSARRKVSPEAVRALLEAVGKDLGELAAACSQLIADTTGLV
DEEQVQEYYGGKVEATGFRVADMAVAGNAGEALRLLRHALASGVDPVPIVAVLAGQLRQV
ARVATAGGGSSAALAKQLGMAPWQVDRARQASRGWDGERLGRAIQAVAAADFEVKGGGRD
PVYAAERAVLTICQERQAR
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgtcccgcccttggtgctgatcattggcccggagcaactcctggccgatcgg
gctgtgcgcagcacgatcgatctggtgcgtgagaccgagcccgacgcggaggtcgtgcgg
atcgaggccgctgcgtacgaaccgggtgagctgatgttgcacaccagcccgagtcttttc
ggtggtttgaagatcgtcgtgctgcgcgggctcgacgaagcaggcgacgcgctcctcgac
gaggtcgtcgcgctcgccaaggcacccgccgagggttcggtgctgatcgtcgcgcacaag
ggtggcaatcgcggcaagcgtgcgctggacgccctgaagaagggcggcgcccggctcatc
gatgctccggcgatcaagtccgaccgagacaagtcggccttcgtcaccaatgagttccga
agtgcgcggcgcaaggtgtcgcccgaggcagtgcgggccctgctcgaagcggtcggcaaa
gacctgggggagttggcggcggcctgctcgcagctcatcgccgacaccaccggcctcgtg
gacgaggagcaggtgcaggagtactacggcggcaaggtcgaggcgaccggtttccgcgtg
gccgacatggccgtggccggcaacgccggcgaggcgctgcgcctccttcggcacgccctg
gcttccggggtcgacccggtgccgatcgtcgccgtgctcgccggtcagctgcgacaggtg
gcgcgggtggccacggccggcggcggatcctcggcagccttggccaaacaactgggcatg
gctccgtggcaggtcgaccgggcccgccaggcgtcccgcgggtgggacggtgagcggctc
ggccgcgccatccaggccgtcgcagcagcagacttcgaggtcaagggcggcggccgcgac
ccggtctacgcggcggaacgcgcggtgctcacgatctgccaggagcggcaggcgcgctga
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