Yimella sp. cx-51: J5M86_11975
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Entry
J5M86_11975 CDS
T07124
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5M86_11975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yim03021
]
J5M86_11975
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_11975
Enzymes [BR:
yim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5M86_11975
Transcription machinery [BR:
yim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5M86_11975
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5M86_11975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QTH37581
LinkDB
All DBs
Position
complement(2510659..2514567)
Genome browser
AA seq
1302 aa
AA seq
DB search
MLDVNFFDELRIGQATAEDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDTDQRHKDLPSLEAQIEVEKKEVENRRDNDVNTRAAKLEGD
LATLESEGAKADVRRKTREAAEREMTQIRKRADAQIERLEQVWDRFKNLKVQDLEGDEVL
YREMRDRFGLYFEGGMGAAALQKRLESFDLEAEAESLRETIATGKGQRKTRALKRLRVVT
AFQQTTNSPASMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERQR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAVQIHPLVCTAFNADFDGDQ
MAVHVPLSSEAQAEARILMLSSNNVLKPADGRPVTMPSQDMITGIFHLTSQDGEVAAEGA
DNGALRTFSSPAEAHMAFDRGEIKLGSLVSIRLFDQVPPEGFDLPEGVEADEMGRASGYQ
LATTLGRVLFNQTLPEDYPFLNRAIDKKALGAVVNDLAERYAKVQVAASLDALKEAGFYH
ATRSGCTVAIGDVQTPDRKEEILSGYDTKAAKVQGQFERGLITDDERRQELIEIWTQGTN
EVAAEMQANFDPKNPIYRMVSSGAGGNWFQIRQIAGARGLMANPKGEIIPRPIKSNFREG
LSVLEFFISTHGTRKGLADTALRTADSGYLTRRLVDVSQDVIIREADCGTDRGLVLPIGQ
RGLDGDLIEHENVESSVYARNLAVDVEKDGDVLAAAGSDLGDVNLDKLLAAGIEEVKVRS
VLTCESRVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAAAAD
DITQGLPRVVELFEARTPKGVAPIAEASGRVEVKDDDKSRTIVLTPDDGSEEQNYPVSKR
ARLLVEDGQHVEVGSLLVQGAIDPKQVLRIQGAREVQKHLVDEVQGVYRQQGVSIHDKHI
EVIVRQMLRRVTIIEAGDTDLLPGELAERGRFEDSSRKAVAEGGRPASGRPELMGITKAS
LATDSWLSAASFQETTRVLTEAAMHGRRDPLLGLKENVILGKLIPAGTGLTRYRNLTVEP
TEEAKAALYALPDYQPYDYPVFGPGSGEAIRLDDEALGFTDN
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgagcttcgcatcggccaggcaaccgccgaagacatc
cgccagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggcccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgctcggccgtgcgtcgtgagcgcatgggccacatcgagctcgccgctccg
gtcacccacatctggtacttcaagggcgtcccttcgcgcttgggttacctgctcgacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacctccgtcgac
accgaccagcgccacaaggacctcccgtccttggaggcacagatcgaggtcgagaagaag
gaggtcgagaaccgtcgcgacaacgacgtcaacacccgcgccgccaagctcgagggcgac
ctcgccacgctggagtccgagggtgccaaggccgacgtccgtcgcaagacccgtgaggcc
gccgagcgtgaaatgacgcagatccgcaagcgtgcggacgcgcagatcgagcgcctcgag
caggtctgggaccgcttcaagaacctcaaggtccaggacctcgagggcgatgaggtgctc
taccgcgagatgcgtgaccgtttcggtctgtacttcgagggcggcatgggcgccgctgca
ctgcagaagcgcctggagagcttcgacctcgaggccgaggcagagtcgctgcgcgagacc
atcgccaccggcaagggtcagcgcaagacccgcgccctcaagcgcctgcgcgtggtgact
gccttccagcagaccaccaacagcccggcctcgatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgtccgatggtgcagttggacggtggccgctttgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgctcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggctgtcgacagc
ctcttcgacaacggtcgtcgtggacgtccggtcaccgggccgggcaaccgtccgttgaag
tcgttgtccgacatgctcaagggcaagcagggacgtttccgtcagaacctgctcggtaag
cgcgtcgactactccggccgttcggtcatcgtggtcggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctcgaccacgcgcagaacatcaagtcggccaagcgcatggtggagcgtcagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctgaaccgc
gcacccacgctgcaccgtctgggcatccaggccttcgagccgcagttggtcgagggcaag
gccgtccagatccacccgctggtctgcaccgcgttcaacgctgacttcgacggtgaccag
atggctgtgcacgtgccgctgtcgtcggaggcgcaggccgaggcccgcatcctcatgctg
tcgagcaacaacgtgctgaagccggccgacggtcgtccggtcaccatgccgagccaggac
atgatcaccggcatcttccacctcacgtcccaggacggcgaggtggcggctgagggcgct
gacaacggtgcgctgcgtacgttctcctcgccggccgaggcccacatggccttcgaccgc
ggtgagatcaagctcggttcgctggtgagcatccgtttgttcgaccaggtgccgccggaa
ggtttcgacctgcccgagggcgtcgaggccgacgagatgggtcgggcgtccggctaccag
ctggccaccaccttgggtcgcgtgctgttcaaccagacgctgccggaggactaccccttc
ctgaacagggccatcgacaagaaggccttgggtgcggtcgtcaacgacctcgccgagcgt
tacgccaaggtgcaggtcgctgcatcgctggacgcgctcaaggaggccggtttctaccac
gcgacgcgttcgggttgcaccgttgccatcggcgacgtgcagacgcccgaccgcaaggag
gagatcctctccgggtacgacaccaaggccgccaaggtgcagggccagttcgagcgtggt
ctgatcaccgacgacgagcgccgtcaggagctcatcgagatctggacgcagggcacgaac
gaggttgctgctgagatgcaggccaacttcgacccgaagaacccgatctaccgcatggtg
tcctccggcgccggtggtaactggttccagatccgtcagatcgccggtgcgcgtggcctc
atggccaaccccaagggtgagatcatcccgcgtccgatcaagtccaacttccgtgagggc
ttgtcggtgctggagttcttcatctccacgcacggaacccgtaagggtctggccgacacc
gcgctgcgtaccgccgactcgggttacctgacccgacgcctggtggacgtctcgcaggac
gtcatcatccgcgaggccgactgtggtaccgaccgtggtctggtgctgccgatcggtcag
cgtggtctggacggcgacctgatcgagcacgagaacgtcgagtcctcggtctacgctcgc
aacctcgcggtcgacgtggagaaggacggcgatgtgctcgccgccgccggctccgacctg
ggcgatgtcaacctcgacaagctgctcgcagccggtatcgaggaggtcaaggtccgctcg
gtgctcacctgtgagtcgcgcgtcggcacctgcgccatgtgctacggccgctcgctggcc
accggcaagctggtcgacatcggtgaggccgtcggcatcatcgcggcccagtcgatcggt
gagcccggcacgcagctgaccatgcgtaccttccacaccggtggtgcggctgcggccgac
gacatcacccagggtctgccccgtgtggtcgagctgttcgaggcgcgcacccccaagggt
gtcgccccgatcgccgaggccagtggacgtgtcgaggtcaaggacgacgacaagtcccgc
accatcgtcctcaccccggacgacggctcggaggagcagaactacccggtcagcaagcgt
gcgcgcctgctggtcgaggacggtcagcacgtcgaggtcggttcgctgctcgtgcagggt
gccatcgaccccaagcaggtgctgcgcatccagggtgcccgcgaggtgcagaagcacctg
gtggacgaggtgcagggtgtgtaccgccagcagggtgtgtcgatccacgacaagcacatc
gaggtcatcgtgcgccagatgctgcgtcgcgtgacgatcatcgaagccggtgacaccgac
ctgctcccgggtgagctggccgagcgtggccgcttcgaggactcctcgcgcaaggcggtc
gccgaaggcggacgtccggcgtcgggtcgtcccgagctcatgggtatcaccaaggcgtcg
ctggccaccgactcgtggttgtcggcagcctccttccaggagaccactcgcgtcctcacc
gaggccgcgatgcacggtcgccgtgacccgctgttgggtctgaaggagaacgtcatcctc
ggtaagttgatcccggccggtacgggtctgacccgttaccgcaacctcacggtcgagccg
accgaagaggccaaggccgcgctctacgccctgccggactaccagccctacgactacccg
gtcttcggcccgggcagtggcgaggcgatccgtctggacgacgaggccctgggcttcacg
gacaactga
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