Yersinia intermedia: CH53_14
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Entry
CH53_14 CDS
T03608
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yin
Yersinia intermedia
Pathway
yin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH53_14
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yin03019
]
CH53_14
03009 Ribosome biogenesis [BR:
yin03009
]
CH53_14
Enzymes [BR:
yin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CH53_14
Messenger RNA biogenesis [BR:
yin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH53_14
Ribosome biogenesis [BR:
yin03009
]
Prokaryotic type
rRNA processing factors
CH53_14
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJJ19540
LinkDB
All DBs
Position
11714..15196
Genome browser
AA seq
1160 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EAAPANVNAKPSVAPQVTASAAASEQPGFFSRLFSGLKGIFGTSEEEVKPVEVEKTETNE
NRRNDRRNPRRQNNGRKERGDRTPREGRDNSARDNNGGRDSNSRDNANREGREDQRRNKR
PAPQTAAPQAQTDVVEADKAPRDEQQPQRRGDRQRRRQDDKRQVAQEVKAEVEVAAVSVV
EEVQPEQEERQQVMQRRQRRQLNQKVRIQSANNELNVLENAVQESPVSTPVANIAAPVVQ
EEVKLLPQATAQSDDEGSHDRNANNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSA
MPLAGAFASPEMASGKVWVRYPVAQTVEPAFVANPVEQPLPVEVAAVETPVNIPAVIVAA
PVVAAAPVAIVTETVAPAPASQHKPGGSSSSAAAVPGRAPVAAPVVVELPAVEPAAVEPA
AVEPTAVEPASEVAQVEAASEVEETAIVDAGVAETIAEPVVQEAIIEEAIAEDTVVEENI
VAETAIVEAPTEEAVVAETVVADAVAEAPVVTEAIVETSAVEEPLIEEAVVETSVSDAVI
VAAPVVVPQQPVVAHPEGVVFKHYASAPMTKAPAPDYAPESPTKGQWERPAFDFAGNGSA
GGHAAATQATAPATKPQSVE
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcacccgaatcgaacccagtctggaagccgcttttgttgattac
ggtgctgaacgacatggtttcctcccattaaaagaaatttctcgcgaatatttccctagt
aattattcctctcatggccgcccaaacatcaaagatgtactgcgcgaaggccaagaagtt
attgttcaggttgataaagaagaacgtggtaataaaggtgccgcactaaccactttcatc
agcctggctggcagttatttggttctgatgccgaacaacccacgtgccggcggtatttct
cgccgcattgagggtgatgaccgcaccgaactgaaagaagccctatcctccctgcaattg
cctgatggcatgggtctgattgtccgtactgccggtgttggcaaatctgctgatgcactg
caatgggatttgtcattccgcctgaagcattgggatgcgattaaaaaagccgctgaaggt
cgccctgcgccgttcttgatccatcaggaaagtaacgtgattgtccgcgctttccgtgat
tacctgcgcccggacatcggcgagatcctgatcgataaccctaaagttctcgaactggca
aaagagcatatcgccgctctgggtcgcccggatttcagtagcaaaatcaagttgtatagt
ggtgaaatccccctattcagccactaccaaattgagtctcagattgagtcagcgttccag
cgtgaagtgcgtctaccttccggcggttctatcgttattgataccaccgaagccctgacg
gcaattgatatcaactccgcgcgtgcaacacgtggtggcgatatcgaagaaaccgcattc
aacaccaaccttgaagctgctgatgagattgcccgccagttacgtttacgtgacctcggt
ggcctgattgttatcgatttcatcgatatgacgccagtgcgccaccagcgtgaagttgaa
aaccgcctgcgtgatgccgttcgccaagaccgcgcccgcatccagattggccgtatttct
cgctttggcttgctggaaatgtcccgtcagcgtcttagcccgtcactgggtgagtcaagc
caccacgtgtgcccacgctgtagcggtaccggtaccgttcgtgacaacgaatcattgtca
ctttctattctgcgtctgattgaagaagaagcgctgaaagaaaatacccatgaagttcat
gcaattgttccggtacagattgcgtcgtatctgctcaacgaaaaacgtgagtccgtcaac
gccattgaaaaacgtcaaggtggtgtgcgcgcggtgatcgtgccaaacgatcagatgcaa
acaccacactattctgttcttcgggtacgtaaaggcgaagaggttccttctcttagctac
ctgttgccacaactgcatgaagcagagatggcacaaccgttggaagaagcaacgattgag
cgtaaacgtccagaacagccagcgttggcaacgttctctctgccaaccgaagtgccacca
gaagccgcacctgctaacgtcaatgctaaaccaagcgttgcgccacaagtaacggcatct
gctgctgcatcagaacaacccggcttctttagccgtttgttcagtggcctaaaaggtata
ttcggcacatcggaagaagaagttaaaccggtagaggttgagaaaaccgaaaccaacgaa
aaccgccgtaatgatcgtcgcaatcctcgccgccagaataatggccgtaaagagagaggt
gatcgcacgccgcgtgaaggccgtgataacagcgcgcgtgacaacaatggtggtcgtgac
agcaatagtcgtgacaatgcgaaccgcgaaggtcgtgaagatcagcgtcgcaacaagcgc
cctgcgccacaaactgctgcgccgcaagcgcaaactgacgttgtcgaagctgataaagca
ccacgtgacgagcagcaaccacagcgtcggggtgatcgccaacgccgtcgtcaggatgat
aaacgtcaggtagcgcaggaagtcaaagccgaagtagaagtggcagcagtcagtgtggtc
gaagaagtgcaacctgagcaagaagaacgtcaacaggttatgcagcgtcgtcaacgccgt
caattgaatcagaaagtccgtattcaatctgcaaataatgagctgaatgtgctggaaaat
gcagtgcaggaaagtccggttagtacgccggtggcaaacattgcagcgccagttgtgcag
gaagaagtgaaattactgccacaagccacagctcaaagcgatgatgaagggtctcacgat
cgcaatgccaataatgaaaatggcatgccacgtcgttcgcgccgctcacctcgccatctg
cgcgtcagtggtcagcgtcgccgtcgttatcgtgatgagcgttacccgacacaatctgct
atgccgctggctggtgcttttgcctcaccagaaatggcttcaggcaaagtgtgggtccgt
tacccagttgctcagacagttgaacctgcttttgtagcaaacccggttgaacaaccattg
ccagtagaagttgcagcggtagagactccggttaatatcccagccgtgattgtagcagcc
ccagttgttgccgcagcgcctgttgctatcgtgaccgaaacagtcgctccagcccctgcg
tcgcagcataaaccaggtggttcttcatcttcagccgccgctgtaccaggccgtgctcct
gttgccgcgcccgtagttgtagaactgcctgctgtagaaccggctgctgtagaaccggct
gccgttgagccaaccgccgtagagcctgcgagtgaagtggcgcaagttgaagcagcatct
gaagttgaagaaactgcaattgtagacgctggagttgcggaaactatcgctgaacctgtt
gttcaggaagcgataattgaggaagcaattgctgaagacactgtggtggaagaaaacatt
gttgctgaaactgctattgttgaagcaccgacggaagaagctgttgttgctgaaaccgtg
gtggcagacgctgtagctgaagcaccggtggtaactgaagccattgttgaaacatcagca
gttgaagagccgctgattgaagaagccgttgttgaaaccagtgtaagtgacgcggttatt
gttgcggcgccagttgttgtgccacaacagccggttgtcgctcatcctgaaggtgtggta
ttcaaacactatgcttcagcaccaatgacgaaagcaccggcaccggattacgcgccagag
tcaccaactaaaggccaatgggaacgcccagcctttgattttgcaggtaacggttctgct
ggtggccacgcggctgcaacgcaggcaacggcaccggcaacaaaaccgcaatccgtcgaa
taa
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