Yersinia intermedia: CH53_1803
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Entry
CH53_1803 CDS
T03608
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yin
Yersinia intermedia
Pathway
yin03030
DNA replication
yin03410
Base excision repair
yin03420
Nucleotide excision repair
yin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH53_1803 (polA)
03410 Base excision repair
CH53_1803 (polA)
03420 Nucleotide excision repair
CH53_1803 (polA)
03440 Homologous recombination
CH53_1803 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yin03032
]
CH53_1803 (polA)
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_1803 (polA)
Enzymes [BR:
yin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CH53_1803 (polA)
DNA replication proteins [BR:
yin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CH53_1803 (polA)
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CH53_1803 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH53_1803 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Obc1_cap
HHH_5
Prok-E2_E
DUF2529
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AJJ20140
LinkDB
All DBs
Position
2048389..2051187
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT
LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELKVSAPDDDQLHQLFSRYEFKRWLVDVEAGKWLDGK
KDRPTAQTSNRAFAVAEPVEAVEVTAVLSQENYQTILDEKSLAEWIERLKKAEVFAFDTE
TDGLDTLSSNLIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVLATLKPLLEDDKALKV
GQNLKFDQSMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIA
GKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL
SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLP
ILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHL
SQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQL
SIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATRRK
AAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESA
EQKIRELMEQSMQLAVPLKVDVGVGDNWDQAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaacccattgatcctcgttgacggttcctcttacctctatcgt
gcttaccatgcgttcccaccactgaccaacggcagtggcgaaccaacgggtgcgatgtac
ggcgtgttgaacatgttgcgcagtctgttgctgcaatatcgtcctagccatgtcgcggta
gtattcgatgctaaaggtaaaacattccgtgatgagcttttcgctgaatataaatcccac
cgcccacccatgcctgatgatttgcgggctcaaattgagccattgcaccaaatggtgaaa
gctatggggctgcctttattggttgtttctggtgtggaggccgacgatgttattggtact
ttagcgcaagaagctgagaaagcaggtcacgccgtattaatcagtactggtgataaggat
atggcgcaattagttacgccaaatatcactttaatcaatacaatgaataacgctattttg
gggccgcaggaagtatgcgaaaaatacggcgttcctcctgaattgattattgattttctg
gctctaatgggggactcctcagacaatattccaggtgttcctggtgttggtgaaaagacc
gcacaagctttattacaaggtttgggtgggctggatgcgctgttcagtaatttggataaa
atatccacactgacattccgtggtgctaaaaccatgtccgccaagttagagcagaataaa
gatgttgcttacctctcctataaattagccaccataaaaacagacgttgaattagatgtg
acctgtgatgagctaaaagtttcggcccctgatgatgatcaattacatcagttattcagc
cgttatgaatttaagcgttggttggttgatgtagaagcaggcaaatggctagatggtaaa
aaagatcggccaacggcacaaacaagtaatagagcttttgcggtagcagagccagttgag
gcagttgaagtcaccgcagtattgtcacaagagaactatcagaccattttggatgagaaa
tctttagctgagtggattgagcgccttaaaaaagcagaagttttcgcttttgatactgaa
actgacggtctggatacgcttagcagcaatttaatcggtatatctttcgccgttgcaccg
ggtgaggccgcttatttgcccttggcgcatgattatctggattctcctgcccagctcgac
cgggattgggtattggccacgctaaaaccactactggaagacgataaagcccttaaagtt
ggccagaatctcaagtttgaccaaagcatgctggcacgttatggcattgagctgcgcggt
atcgctttcgataccatgctggaatcttacgttttagacagtgttgctggtcgccacgat
atggatagtctggcagagcgttatctcaaccataaaactattacttttgaagagattgcc
ggcaagggtaaaaaccaactgacctttaatcaaattgcgttggaacaagctgggccttat
gccgcagaagatgccgacgttacgctacagttgcatttggtgctgtggccaaaactgcaa
caaagtgaagggctaaagcgggtattccaggaaattgagatgccgttattaccgattctg
tcccgtatagagcgtacaggtgtcttgattgaccagaatatcttggccgcacattcaaaa
gagctgactatccgcctcgatgagttggaaaaacaggcccacgaattggctgaagaaccg
ttcaacctggcatcgcctaaacagcttcaggccattttgtatgaaaaacaaaaactgccc
attttgaagaaaacccctggtggtgctgcttcaactaatgaagaagtgttggctgagcta
gcgttagattaccctctgccgaaggtgatcctagagtatcgtggtctggctaagctaaaa
agtacttataccgacaagctgccgctgatgattaacccagtttcaggccgcgtccatacg
tcttatcatcaggcggtgacagcgacagggcgtttgtcctcacgtgatcctaacctacaa
aacattccagtgaggaatgaagaaggccgtcgtatacggcaggcttttattgcgcccaaa
ggttatcgcatcatggcggctgactactcacagattgagctgcgtattatggcgcacttg
tcgcaggataaagggctattagctgcgtttgctgctggaaaggatatccaccgtgcgaca
gcagcggaagtctttggtacgccactggaaaaggtcacaactgaacaacgccgcagtgcc
aaggcaattaactttgggcttatttatgggatgagtgcttttggtctggcgcggcagcta
agtattcctcgtggggaagcacagcgctatatggacctctattttgagcgctatcccggc
gtgttggaatacatggagcgcacacgtaagcaagcggccgatcaaggttatgttaccact
ctggatggtcgtcgcctctatttgccagatattcattcacgtaatgcaactcgccgtaag
gctgctgaacgtgaagcgatcaatgcgccaatgcaaggtaccgccgctgatattatcaaa
cgggcaatgattgccgtggatgcctggttacagcaggaaccagaaccattggtacgggta
atcatgcaggtacacgatgaattggtgtttgaagtgcatgaaagtgtattggaaagcgct
gaacaaaaaattcgtgaactgatggagcagagtatgcaactggcggtgccattgaaggtg
gatgtcggtgttggtgataactgggatcaggctcactag
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