Yersinia intermedia: CH53_1961
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Entry
CH53_1961 CDS
T03608
Name
(GenBank) hypothetical protein
KO
K07347
outer membrane usher protein
Organism
yin
Yersinia intermedia
Pathway
yin02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CH53_1961
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
yin02000
]
CH53_1961
02044 Secretion system [BR:
yin02044
]
CH53_1961
02035 Bacterial motility proteins [BR:
yin02035
]
CH53_1961
Transporters [BR:
yin02000
]
Other transporters
Pores ion channels [TC:
1
]
CH53_1961
Secretion system [BR:
yin02044
]
Chaperone-usher system
Type 1 pilus assembly protein
CH53_1961
Bacterial motility proteins [BR:
yin02035
]
Pilus system
Fimbrial proteins
CH53_1961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
PRC
Motif
Other DBs
NCBI-ProteinID:
AJJ19365
LinkDB
All DBs
Position
complement(2218103..2220760)
Genome browser
AA seq
885 aa
AA seq
DB search
MRLARASVKKKFSGRKKALTLCIALILHVDTALAQEEPKNLEFDESLFLGTNFASGLNQL
NKENSVTAGNYDAVDVLVNNKPFKRTAIEFVKNADSSEVYPCLSDEFLTAAGVVLTGKDS
TATKEPNTLKTEAAPSDTAASSTEQCKPLAERVKGTSFNFDQAKLRLELSIPQALLQNRP
RGYIEQSEWQEGEKLAFINYSSNFYRSETQSQQNSTSDYGFVGLKSGLNLGLWQLRQQSN
VRYANNNNGSDTQWNNIRTYVQRPIPQLDSQLTLGETFTDSTLFGTMSFRGIKMATDQRM
WPESMRGFAPEVRGVANTNARVVVSQNGREIYETTVAPGPFVINDLYSTTSQGDLNVEVI
EANGSRSTFTVPFSAVPDSMRPGVSRYNAVVGESRDFTNIDNYFTDFTYERGLTNQLTAN
SGLRLAQDYTALLVGGVLGTPIGAFGLNTTYSHAKVENDDTQNGWRMQATYSQTFNQTGT
TFSLAGYRYSTKGYRDLNDVFGVRSTQKNGGTWDSTTYKQRSQFTTSINQTLGNYGQLSA
SASTSDYYNDTQRDTQLQLSYSNSYQDISYNLAISRQRTVYTSTQYNWDDDTTNQTTTRY
GNTENIATLTVSIPLNIGNKNQYLSMSASRNPKSGNSYQTSLSGTAGERNSFNYSVNAGY
DDSNISGSSNNWGANVQKQFPNATVNGSYSRGSNYTQYGVGARGAAVIHSKGVTLGPYLG
ETFGLIEADGAQGATVRNAQGARIDNNGFALVPALTPYNYNTVGLDTKGINRNTELKENQ
GRVVPYAGAAVKVKFDTLKGYAVLIQTQTNDGGGLPLGADVYNSKNEIVGMVGQGNQIYV
RVKDDKGLLYVRWGESSSEQCELPYTFDGQDTEQDIIHITGSCHR
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttgcacgcgcttctgtgaaaaaaaaattctctggacgtaagaaagcattaaca
ctatgtattgctttaatcttacatgttgatacggctttggctcaggaagaaccaaaaaac
ctcgagttcgatgagtctctcttcttagggacaaattttgcctccggtttgaatcaactc
aataaagagaattcggtcaccgccgggaattacgatgctgtcgatgtcttggttaataac
aaaccgtttaaacgcactgccattgaatttgtaaagaacgctgactcatcagaggtttat
ccctgcctgagtgatgaattcttaactgcggctggcgttgttcttactggcaaagacagt
actgcaaccaaagaacctaatacgctcaaaacagaagccgccccctcggatacggctgct
tcgtctacagaacaatgcaagccactggctgagcgggtaaaaggtacctcttttaacttt
gaccaagccaaacttcgtctagaattgtcgattccacaagctttgttgcaaaaccggccc
agaggttatatcgagcaaagtgaatggcaggaaggcgaaaagctcgcattcattaactac
agttccaacttttatcgcagcgagacgcagtctcagcaaaacagcacctctgattacggg
tttgttggcctaaaaagtggcctcaatctcgggttatggcaattacgccaacaatcaaac
gtgcgctatgccaataataataatggcagcgatacccaatggaataatattcgtacttat
gtccagcgccctatccctcaattggatagtcaattaacgctgggcgaaaccttcaccgac
agtacgttatttggcaccatgtcgttccgtggtattaaaatggcaactgaccagcgcatg
tggcctgagtcaatgcgtggttttgcccctgaagtccgtggtgttgccaacactaatgcg
cgggtggttgtgagccagaatgggcgcgaaatttatgaaaccaccgttgcacccggcccc
tttgttattaacgatttatacagcaccaccagtcagggtgacctcaatgttgaggttatt
gaggcaaatggtagccgttcaacattcaccgtgccattcagtgccgtaccagactccatg
cgtccaggtgttagccgctataatgcagtggtcggggaatctcgtgatttcaccaatatt
gataactatttcactgacttcacctatgagcgcggccttaccaatcagttgacagcgaac
agtggccttcgtttagcgcaagactatacggcactccttgtcggtggcgtattgggtacc
cccattggggcttttggcctcaatactacctactctcatgcgaaagttgaaaatgatgac
acgcagaatggctggcggatgcaagcaacctatagccagacatttaatcaaaccgggacc
acattttcattggccggatatcgctattcaaccaaaggatatcgcgatttaaatgacgtt
tttggtgtgcgctcaacgcaaaaaaatggcgggacatgggattcaacaacctataaacaa
cgcagccagtttacgacctcaattaaccagacgttgggcaattatggtcaactctctgca
tcagcgtcgaccagtgattattataatgatacgcaacgagatacgcagttacagctaagc
tactcaaatagctaccaagatatcagttacaaccttgccattagccgtcagcgcactgtt
tatacctcaacccaatataattgggatgacgatacgacgaatcagacgacaacgcgctac
ggtaatactgaaaatattgcgacgctaactgtgtctatcccactcaatattggcaataaa
aatcaatatttatcgatgtctgctagccgtaatccaaaaagtggtaatagctatcagacg
tcattatcaggtaccgctggtgaacgaaacagctttaactattcagtgaatgccggctat
gacgacagcaatatcagtggtagttcaaataactggggggcgaatgtgcaaaaacaattc
cctaatgcgaccgtcaatggcagctattcccgtggtagtaattacacccaatatggtgtt
ggtgctcgtggggccgcagtaattcatagtaaaggtgtgacactcgggccttatttgggc
gagaccttcggtttaattgaagcggatggtgctcaaggggcaacagtacgaaatgcacaa
ggggcgaggattgataataacggatttgccttggtgcctgcgttaacaccctataattac
aataccgttggtttggatactaaaggtattaatcgcaatactgaactgaaagagaatcaa
ggtcgcgtcgttccttatgccggggctgcagtaaaagtcaaattcgatactctgaaaggc
tatgcagtgttaattcaaacccaaaccaatgacggtggagggttaccactgggtgccgat
gtttataacagcaaaaatgaaattgtcgggatggtaggtcaagggaatcagatctacgta
cgtgtaaaagacgacaaaggcttactttatgtgcgctggggtgagagcagcagtgagcag
tgtgaattaccttatacttttgatggtcaggatactgagcaggatattattcatataaca
ggcagttgccaccgttaa
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