Yersinia intermedia: CH53_1969
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Entry
CH53_1969 CDS
T03608
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
yin
Yersinia intermedia
Pathway
yin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH53_1969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yin03019
]
CH53_1969
Enzymes [BR:
yin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH53_1969
Messenger RNA biogenesis [BR:
yin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH53_1969
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
AJJ17374
UniProt:
A0A0T9MHY9
LinkDB
All DBs
Position
complement(2228978..2230264)
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AA seq
428 aa
AA seq
DB search
MSKTHLTELKFSDFALHPLVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAP
RNNRKRPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaactgaagttttccgacttcgccctgcacccgctagtt
attgaagcccttgaaaacaaagggtttcataattgtacgccgatccaggcgttagcattg
ccactcaccctctctgggcgtgatgtagcgggtcaggcgcaaacaggtaccggcaagacg
ctggcattcttagcgtctactttccattatttgctttctcaccccgcagaagagggtcgc
cagactaatcaaccacgcgcattgattatggcaccaacgcgtgaattagcagtacaaatt
cactccgatgcagagtcactttctcagatgactggcctgaaattaggcttggcttatggt
ggtgacggctacgataaacagcttaaagtgctggaaagtggcgtcgacattctgatcggt
actactggccgtttaatcgactacgcgaaacaaaattatattaacctcggtgcgattcag
gttgtggttcttgatgaagcagatcggatgtacgatctgggctttattaaagatatccgc
tggctgttccgccgtatgccttccgttgataagcgtttaaatatgctgttctctgccacg
ctatcgtaccgggtacgtgaattggcattcgagcaaatgaataacgccgaatatgttgaa
gtggaaccgttacaaaaaaccggccaccgcattcaggaagagctgttctacccttcaaat
gaagaaaaaatgcgtctgcttcagacgttgattgaagaagagtggccagatcgctgcatt
atttttgccaataccaaacatcgttgtgaagagatctggggccatttggctgctgatggt
catcgtgttggtttactgaccggtgatgtggcacagaaaaaacgcctgcgtattctggaa
gatttcactaaaggtgatttggatattctggttgctaccgatgttgccgcccgtggtctg
cacattccactggtaacccatgtgttcaactatgacctgcctgacgactgtgaagactat
gttcaccgcattggccgtaccggtcgtgctggcgaaagcggtcattccatcagcctggca
tgtgaagagtacgcgttaaacttaccggctattgagacctacaccggtcatagcattccg
gtaagcaaatataatagcgatgcgttattaactgatttgccggcgccaaaacgtctggcc
cgtacccgtaccggtaatggcccacgccgtaactctgccccacgtcgcagtggtgcacca
cggaataaccgtaagcgaccgagctga
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