Yersinia intermedia: CH53_1971
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Entry
CH53_1971 CDS
T03608
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
yin
Yersinia intermedia
Pathway
yin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH53_1971 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yin03021
]
CH53_1971 (rho)
03019 Messenger RNA biogenesis [BR:
yin03019
]
CH53_1971 (rho)
Transcription machinery [BR:
yin03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CH53_1971 (rho)
Messenger RNA biogenesis [BR:
yin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CH53_1971 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AJJ18663
UniProt:
A0A0B6IC88
LinkDB
All DBs
Position
2231333..2232592
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGTRKEELLTTTEELQKMWILRRILHPMGEIDAMEFLISKLATAKTNDQFFDNMRRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaacacgccggtttctgatctgataacacttggcgaaaat
atggggctggaaaacctggcccggatgcgtaaacaagacattattttctctattcttaag
cagcacgcgaaaagtggagaagatatcttcggtgacggtgtattggagatattgcaggat
ggatttggtttcctccgctctgcagacagctcctacctcgccggccccgacgacatctat
gtatccccaagccaaattcgccgtttcaaccttcgcactggtgataccgttgccggtaag
attcgtccgccgaaagaaggtgagcgttattttgcattgttaaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgtaacaaaatcctgttcgaaaacttaaccccattacat
gccaactctcgtctgcgcatggaacgtggtaatggttcgacggaagatttaactgctcgc
gtacttgatttggcctcgccaatcggtcgcggccaacgtggtctgattgtggcaccgcct
aaagcgggtaaaaccatgctgttgcagaacatcgctaccagcattgcttacaatcaccct
gactgcgtgttgatggtattactgattgacgaacgtcctgaagaagtgactgagatgcaa
cgtctggttaagggtgaagttatcgcttctacttttgatgaacccgcatcccgtcacgtt
caggtagctgaaatggttatcgagaaagcgaaacgtctggttgagcataaaaaagacgtt
atcatcttgctggattccattactcgcttggcccgcgcatacaacaccgtggtacctgct
tcaggcaaagtattgacggggggtgtggatgctaacgccttacatcgtcctaagcgtttc
tttggtgctgcacgtaatgttgaagagggcggtagcctgactatcattgctacggcgttg
gttgataccggttctaaaatggatgaagttatctatgaagaatttaaaggtaccggcaac
atggaactgcatttatcgcgcaaaattgccgaaaaacgtgtgttcccagccattgatttc
aaccgctctggtacacgtaaagaagagttgctgaccaccactgaagagctgcaaaaaatg
tggatattgcgccgtattcttcatccaatgggtgaaatcgatgcgatggagttcctcatc
agtaaactggcaacagcgaaaactaacgatcagttcttcgataacatgagacgttcgtaa
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