Yersinia intermedia: CH53_2000
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Entry
CH53_2000 CDS
T03608
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yin
Yersinia intermedia
Pathway
yin03420
Nucleotide excision repair
yin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH53_2000 (uvrD)
03430 Mismatch repair
CH53_2000 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_2000 (uvrD)
Enzymes [BR:
yin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH53_2000 (uvrD)
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH53_2000 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CH53_2000 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
PhoH
Motif
Other DBs
NCBI-ProteinID:
AJJ21266
LinkDB
All DBs
Position
2261073..2263235
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQL
RLLKRLVKALNLDDKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGDR
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSNILTAANTLIANN
DGRMGKNLWTDGAEGEPISLYCAFNELDEARFVVNRIKAWQDNGGALNDCAILYRSNAQS
RVLEEALLQTAMPYRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQ
SDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAAL
EAGEGQADVYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECVEEVRLRATVSRPVNHRNMG
TPMNENDSGFSLGQRVRHPKFGEGTVVNLEGSGEHSRLQIAFPGEGIKWLVAAYARLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgacagcctgaatgaaaaacaacgcgaagccgtggccgcg
ccacgctgcaacctgttggtcctggccggcgcaggcagtggcaaaacccgggtgctggtt
caccgtatcgcctggctgctatcagtagaaaacgcctctccttactcgattattgcagtg
acgttcaccaataaagcggcggccgaaatgcgccaccgtattgaacacttgattggcacc
agtcagggcggaatgtggattgggactttccatgggttggcgcaccgcttgctgcgtgct
catcacatggatgctaacttgccgcaggactttcaaattcttgatagcgacgatcagcta
cggttattaaaacgtttggttaaagcactgaatttagatgataaacaatggccaccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaaggattacggccacagcatattgag
agctatggcaatccggttgaagcgacctggctgcgtatctatcaggcgtatcaggaagcc
tgtgaccgcgccggtctggtggatttcgctgagctgttgttgcgtgcacacgagttgtgg
ctaaacaaaccccatattcttaatcattatcgtgaacgctttaccaacattttggtggat
gagtttcaggataccaacaatatccaatacgcctggatccgcctgctggcaggtgaccgt
tccaatgtgatgatcgtcggtgacgatgaccaatcaatctatggttggcgcggggcgcag
gtggaaaatatccagcgcttcttgaaagatttccctggcgctgaaaccatccggttggag
cagaactatcgttctaccagcaatattttgacggcagcaaacaccctaattgccaataat
gatgggcgcatggggaaaaacctgtggacggacggcgccgaaggcgaaccgatctcactc
tattgcgcctttaacgaattggatgaagcgcgctttgtggttaaccgcatcaaagcctgg
caggacaatggtggtgccctgaatgattgcgccatcttgtatcgtagcaacgcccaatcg
cgcgttttggaagaagcactattacagaccgcgatgccgtaccgtatttatggcggtcag
cgcttcttcgaacgtcaggagattaaagacgcgctggcttatttgcggctaatttccaac
cgcaatgatgatgctgcttttgagcgagtggtcaatacacctactcgcggtattggcgat
cgcacattagatgtggtgcgccaaaccgcccgtgaccgccagctaacgctatggcaatca
acccgtgccatgttgcaggaaaaagtgctggcaggccgcgcagcctctgcgctgcaacgt
tttgttgagctggtggactccctggcccatgaaacagcggatatgccgttgcatgtccaa
agcgatagagtgattcgtgattccggtttgtggtcgatgtacgaacaggaaaaaggtgaa
aaaggtcaggcgcgcgttgagaaccttgaagaattagtcaatgcgacccgtcaatacagt
tatcaggatgaagatcaggatctgatgccactacaggctttcttgtctcatgcggcgctg
gaagccggagaggggcaggccgatgtttatcaggatgcggtgcaattaatgactctccat
tcagcgaaaggcttggagttcccgcaggtattcattgtgggtatggaagaggggatgttc
ccgagccagatgtcactggatgaaggtggccgtctggaagaggaacgccggctggcctat
gttggggtcactcgcgccatgcagaaactgacactttgttatgcagagagccgccgtctg
tacggcaaagaagtgaatcatcgaccatcccgttttatcggcgagctgccgcaggaatgt
gtcgaagaagtgcggctacgcgccacggtctcccgcccggtgaatcaccgcaacatgggt
acgccgatgaatgagaatgacagcggcttttcactgggtcagcgggtgcgtcatcctaag
tttggtgaaggtaccgtggttaatctggaaggtagcggcgaacacagccggttgcaaatt
gcttttcccggtgaggggattaagtggttggtcgcggcttatgcccgattagaagccgta
taa
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