Yersinia intermedia: CH53_2096
Help
Entry
CH53_2096 CDS
T03608
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yin
Yersinia intermedia
Pathway
yin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH53_2096 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yin03021
]
CH53_2096 (rpoC)
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_2096 (rpoC)
Enzymes [BR:
yin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CH53_2096 (rpoC)
Transcription machinery [BR:
yin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CH53_2096 (rpoC)
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CH53_2096 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJJ18990
UniProt:
A0A0T9N4F3
LinkDB
All DBs
Position
2364337..2368557
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRGG
LASLHARVKVRITEEIRNVEGESITRTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKTIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDSGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKALGEVPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcctggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttactgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttgttgaaggcggtatgaccaacctggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaggctattcaggccctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgactaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgttgcctgtgttgccgccagacttgcgtccattggttccgttggatggtggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggacttggcagctcctgacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactcaggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgtggtctgcctaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagccgccaagaagatg
gttgagcgtgaagaagccgtggtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccattggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtattacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggttctgactggcccgaaagaagctgaacgtatttatcgtggtggc
ctggcatcgctgcatgctcgcgtaaaagttcgtattactgaagaaattcgtaatgtcgaa
ggcgaaagcattacgcgcaccagcatcatcgatacgacagttggccgtgctattttgtgg
atgatcgtcccgaaaggcctgccttactctatcgtgaaccagccgctgggcaaaaaagct
atctccaagatgctgaacacctgttaccgcatcctgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggagcagttccaatctggtctggtaaccgcaggcgaacgttataac
aaagtgatcgatatctgggctgcggctaacgaacgtgttgccaaggcgatgatggataac
ttgtctgtagaagatgttgtcaaccgtgacggcgttgtcgaacagcaagtgtcattcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagcta
gcagggatgcgtggtctgatggccaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgtttg
gttgacgtggcacaggatctggtagtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtgaccgcagaggaagttatcaagccgggtacggctgatattctggttccgcgt
aacaccctgttggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacataatcaacaaaggtgaagcagttggtgttattgcagca
cagtcaatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgttaccaatgcagcgggcaagctggttattacttctcgtaatacc
gagctgaagctgatcgacgaattcggccgtactaaagaaagctacaaagtgccttacggt
gctgtaatggctaaaggcgatggcgcagaagtccagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagcggtttcattcgcttcgcggacatg
gttgacggccagaccattacccgccagaccgacgaactgactggtttgtcttctctggta
gtactggatagtgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgatgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaaacgattgtacagttggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaaacgtcgcctggttatctcgccgtta
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgacggcccagaatctccacatgacatt
ctgcgtctgcgtggcgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttgattcaggtagcactgacttcttggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagccgaaggcaaaatcgaggct
acgttcacgcgtgacctgctgggtattaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagaaaacgtaatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtgcacgtcgtaaagctctgggtgaagttcctgtt
gtgccgcaagttagcgcggatgaagcaacggctaacctggctgaattgctgaacgccggt
tttggtaacagcaaagactaa
DBGET
integrated database retrieval system
