Yersinia intermedia: CH53_2819
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Entry
CH53_2819 CDS
T03608
Name
(GenBank) exonuclease SbcC family protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_2819
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH53_2819
Archaeal homologous recombinant proteins
CH53_2819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
AAA_21
cobW
SMC_N
nSTAND3
GTP_EFTU
NTPase_1
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AJJ17213
LinkDB
All DBs
Position
complement(3178594..3182277)
Genome browser
AA seq
1227 aa
AA seq
DB search
MRILSLRLKNINSLQGEWKIDFSAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LTVTPSQNELMTRHTAESLAEVEFEVKGISYRAFWSQRRAKNSPEGNLQAPKVELALCDS
GKILADKVRDKLEMVAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSEYVFEQHKQAKTNVDALHQRASGIELLNEEQRLALTQQIDALSQQEKQLVSAQSA
SQNQINWLTGWQRQQQNLQEYQQQQTIIEQEYQQAQPELQRLARSEPAEKLRPLLRDCSL
SQQDVQQTQLRITALTHQQQQLQSQLTPLAQALEQANTARQQQAARQHEQETLIEQKVVP
LDNLIAQQQHSLAQFAAQLQQLRGKEQQGRQQLELNEQQLLKTHQRLQQLAEYAQQYPHH
QHWEKCLPLWREQFRQLHIQHQQSVANEQQLQQQTVLLSSLQQQATTLNEQDKQQQVVLA
QATLQAGSIQQQLTTLEQQQPSTQLRQQLDELQQQRAARQQLATLSPLAQQVQILHDKQQ
QQFANQQQQLKQLEQQLEEKRQRYKHQKQHQTDLETLWERENQIVRLEAERAKLQPGDAC
PLCGAVEHPAITEYQAIKPSETAERLDKLRRQVEQLATEGSELNAQKNSIQQQQQHLEQE
LQHSRQQLADYQQRWQLLAQPLALTFALHEHAALMNWLEQQEQSEQHCQQKLAEYERLSQ
QYQQAKDTLAQAEQQQQKHLQQLALITQRQQDTQQAQQQLQLQHQRQQDDLAQMRQDFHN
SLADLSLSAPEADQQQSWLALREEENQRWQQDQQEQQLLVLGQKTLETRIEEERRHLQEC
VDQLSALTQQHQQAETLLQQQRQQRQALFGDTRTAEARQMLRQQQQQAELAQQNAAEALQ
QTQSQLNRLAGELAGLEQQYQHHQQRADTAQAQLQQALVASEFEDETALNAALLDEEERQ
RLQQLKQQLSERQQQVHIRQQHASEALEQLLQQCPAGVDKASELVVLQQQSEQLLAQLKA
NTLRQGELRNQLESDTARRRNQHALFEQIEHSQQQYEDWSYLNHLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYLLQRKTSDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDSVFQVK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaggattttaagcttacgcctaaaaaacattaattctctgcaaggggaatggaagata
gatttcagcgccgagccttttgccagcaacggtttattcgctatcaccggcccgacaggc
gcaggtaaaaccacactgctggatgccatttgccttgcgctataccaccaaacaccacgt
ttgactgtcacacccagccaaaatgaattaatgacacgccacacagcggagtcactagcc
gaagttgagtttgaagtaaaaggcattagctatcgcgcattctggagccaacggcgagcg
aaaaacagcccagaaggtaatttgcaagcccctaaagttgagctggcactatgcgacagc
ggtaaaattctggccgataaagtgcgtgataagctggagatggttgcagcgatcactggc
ctggattttggccgtttcactaaatctatgatgttgtcgcaggggcagttcgcggctttt
ctcaatgccgacgccaatgaccgtgccgaattattagaagaactaacggggacggatatc
tacgggcggctatctgaatatgtctttgagcaacataaacaggccaagaccaatgtagat
gccttacatcaacgtgccagtggcattgaactgctcaatgaagaacaacgcctggcgtta
acgcaacaaatcgatgccctcagccaacaagaaaagcagcttgtttcagcacaatcagcg
agtcaaaaccaaataaactggttaaccggctggcagagacagcaacagaatctacaagaa
tatcagcaacaacaaacaattattgaacaagaatatcagcaggcacaacccgaattacaa
cggctggcccgtagtgaaccggctgagaagttgcgccctttactgcgtgactgctcactc
agccaacaggatgtacaacagacacaactgcgtatcaccgcactgacccaccaacagcaa
cagcttcagagccaactaacccccttagctcaagcgttggaacaagccaataccgcgcgc
caacaacaggcggccaggcagcatgaacaagaaacactgattgagcaaaaagtggtaccg
ctggataaccttatcgcgcaacagcagcactcattagcgcaatttgccgcgcaattgcag
caattacgcggcaaagaacaacaaggtagacagcaacttgagttaaatgagcagcagttg
ctaaaaacgcatcagcgcctgcaacaattggctgaatatgcacagcaatacccccaccat
caacactgggaaaagtgcctaccgttatggcgcgaacagttccgccaattgcacatacag
caccagcagtcagtggctaacgagcagcaattacagcagcaaaccgtattactgagcagc
ttgcaacaacaagcgaccacactgaatgagcaagataaacaacaacaagtggtgttggca
caagcgaccttgcaagctggcagcatccagcagcaattaacaacacttgagcagcagcag
ccctcaacacaactacgccaacaactggacgagttgcagcaacagcgagcggctcggcaa
caactcgccacattatcgcctttagcacaacaagttcagatactgcacgataaacagcag
caacaattcgccaaccagcagcagcaattaaagcagcttgaacagcagttagaagaaaag
cgtcaacgctataaacatcaaaaacagcatcaaactgatctggaaaccttgtgggaacgc
gaaaatcagatagtcagactggaagcggaaagagccaaactccaaccgggggatgcctgc
ccactatgtggcgcagtggagcaccccgcgatcaccgagtatcaggcgataaaaccgtcg
gaaacagccgaacggcttgataaactgcgccgccaggttgaacagctcgccactgaaggc
tcagagttaaatgctcagaaaaacagtattcagcaacagcaacagcatctggaacaagag
ttacagcacagccgccagcaattggccgattatcagcagcgctggcagctactggcacaa
ccgctggcgttgacatttgcattacatgaacatgcagcattaatgaattggctggaacag
caagagcaatcagaacaacactgtcagcagaaattggctgaatatgagcgactcagccag
caatatcagcaagccaaagatactctggctcaagcagaacaacagcagcaaaaacacttg
cagcaactggcattaatcactcagcgccagcaagatactcagcaagcccagcagcaacta
cagttgcagcatcaacgccaacaagatgatttagcgcagatgcgccaagacttccataat
agtctggctgatttatcgttatcagcaccagaagctgaccagcaacagagttggctggct
ctgcgggaagaggaaaaccagcgttggcagcaggatcagcaagaacaacaactgttggtt
ctggggcaaaaaacactggaaacacggattgaagaagaacgtcgccatttacaagaatgt
gttgaccaattatcggcactcacccaacagcaccaacaagctgaaaccctattacaacaa
cagcgtcagcaacgtcaggcactgtttggtgatacccgtactgccgaggctcgccagatg
ttgcgccagcagcaacagcaagccgaattggcacaacaaaatgcggcagaagccctgcaa
caaactcagtcccaacttaaccgattagcgggggaactggctggtttagagcaacaatat
cagcatcatcagcaacgcgctgatacagcccaagctcaattacagcaagcactggtggcc
agcgagttcgaggatgaaaccgctttaaacgccgcactgctggatgaagaagaaaggcaa
cgtttgcagcaattgaaacagcaattgagcgagcgacaacaacaagtccatatccgccag
cagcatgccagtgaagcgctggagcaactattacaacaatgtccggcgggtgtagataag
gcgtctgaattggtggtattgcaacaacaatcagagcaattgttggcacaactcaaggcc
aatacattacggcaaggcgagttacgtaatcagttagaaagtgacacagcccgccgtaga
aaccagcacgcactgtttgagcaaattgagcacagtcagcaacaatatgaagattggagc
tatctcaatcacttaattggttccaaagagggggataaattccgtaaatttgctcaaggt
ctgacgctcgaccatttagtctatctggcaaacaaccaactcagccgcctacatggtcgc
tatttgttacaacgcaaaaccagtgatgcattggagctacaagttgtggatacctggcag
gcggatgcgatacgtgatacccgtacattgtccgggggcgaaagctttttagtcagttta
gctctcgccttggcgctgtcggatctggtcagtcacaaaaccagcattgactctctgttt
cttgatgaaggcttcgggacactcgatgctgaaacactggatactgcactggatgctctg
gatagcctgaatgcgtcaggcaaaaccatcggtgtcatcagccatgttgaagcaatgaaa
gaccggattccggtgcagattaaagtgaagaaagtcaacgggctgggtgttagccgctta
gacagcgtcttccaggtcaagtag
DBGET
integrated database retrieval system
