Yersinia intermedia: CH53_2820
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Entry
CH53_2820 CDS
T03608
Symbol
sbcD
Name
(GenBank) exonuclease SbcCD, D subunit
KO
K03547
DNA repair protein SbcD/Mre11
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_2820 (sbcD)
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH53_2820 (sbcD)
Archaeal homologous recombinant proteins
CH53_2820 (sbcD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
AJJ19748
UniProt:
A0A209A177
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Position
complement(3182274..3183512)
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AA seq
412 aa
AA seq
DB search
MRIIHTSDWHLGQHFFTKSRAAEHQAFLHWLINQIEENQVDALIVAGDIFDTGSPPSYAR
ELYNRFVVELQPTGCQLVVLGGNHDSVSTLNESRGLLSYLNTTVISCASSNLDQQIIILK
DRQHQPGALLCAIPFLRPRDLVTSQAGESGGQKQLALQAAIAGHYQALYQRAVELRTELG
LPLPIIATGHLTTVGVTTTDSVRDIYIGTLDAFPAQAFPPADYIALGHIHRAQQVAKTEH
IRYSGSPIALSFDELSKDKSVYLVEFHQQALASVTPLFIPQFQPMQLIKGDLAQIEQQLA
KFSEHLGLPVWLDIEVATQDYLTDIQRRIQVLTAELPVEIVLLRRSKEQRNNSIERQEKE
TLNELTVTDVFERRLALEPDLAEPRQQRMRQMFNQVVDDITQGKDAAQEQPE
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattattcatacctctgactggcatttaggccagcatttcttcactaaaagccgc
gctgccgagcatcaggcatttctgcactggctcattaatcagatcgaagaaaatcaggta
gatgcgctaattgtagcaggtgatatctttgatactggatcgccccccagttatgcccgt
gaactgtataaccgcttcgtggtagaactccaacctacaggctgtcagttagtcgtgtta
gggggcaatcacgattcagtgtcaacactgaatgaatcacggggtttgctctcttatctc
aataccactgtcatttcgtgcgccagcagcaatctcgatcaacaaatcattattctaaaa
gaccgccaacatcaacctggagcactactgtgcgcgatcccgtttttacgtccaagggac
ttagtcaccagccaggcgggtgaatccggtgggcaaaaacaactggcattacaagccgcg
atagcaggccactaccaggcactatatcagcgagcggttgaactgcgtaccgaattgggt
ttgccgctgcccattattgccaccgggcacctgaccactgttggcgtcaccacgacagac
tcggttcgcgatatttatattggtacactggatgctttcccggcacaggcatttccaccc
gccgattacattgctttaggccatattcatcgcgcccagcaggtggctaaaactgagcat
attcgttatagcggctcccccattgcccttagttttgatgaattgagcaaagataaaagc
gtctatctggtggaattccaccagcaggcgctggcatcggttactccactcttcatccca
caatttcaaccgatgcaattaatcaaaggggatttggcgcaaatagagcaacaactggct
aaattctctgaacatctcggcttaccggtatggctggatatagaagtcgccacccaagac
tatcttactgatattcaacgccgcattcaggtactgaccgcagaactaccggttgaaatc
gtactattacgccgcagtaaagaacaacggaacaacagtatcgagcggcaggaaaaagag
acactcaatgagctgactgttaccgatgtgtttgaacgcaggctggcgctggagccggac
ttagccgaaccgcgccaacagcggatgcgtcaaatgtttaatcaagtagttgatgacatc
acgcaagggaaagacgccgcacaggagcagcctgaatga
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