Yersinia intermedia: CH53_3203
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Entry
CH53_3203 CDS
T03608
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yin
Yersinia intermedia
Pathway
yin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH53_3203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yin03019
]
CH53_3203
Enzymes [BR:
yin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH53_3203
Messenger RNA biogenesis [BR:
yin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH53_3203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
Shikimate_DH
UvrD-helicase
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJJ18178
UniProt:
A0A0T9LUL7
LinkDB
All DBs
Position
3586381..3587736
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AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSLDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSSKPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacaccgattcaacgtcaggcaattcctgtggtattggaaggccgtgat
ttaatggccagcgcgcaaaccggtaccggtaaaactgcgggtttcaccttgccgttgttg
caactgcttagtctggatcaacagccaattaaaggccgtcgcccggtacgtgcgttgatc
ttaacgccgacccgtgaactggctgcgcagattgacgaaaacgtacagagttacagtaaa
tatctgaagctacgttcgctggtggtatttggtggcgttagcattaacccacagatgatg
aaattgcgtggtggtgttgatattttggtggcgacgcctggccgtttactggatctggaa
catcagaacgcagtagatttgtccaagattgagattttggtattggacgaagctgaccgc
atgctggatatgggctttattcacgacatccgccgcgtattggcaaaactgcccgctaag
cgccagaacttgctgttctccgccaccttctcagacgagattaaaggtttggcgagcaaa
ttgttgaacaacccagcttctgttgaagtggcgcgtcgcaatactgcttctgagcaaatc
gcgcaaagtgttcattttgtggataaaaaccgcaaacgtgaattattgtctcagatgatt
ggtgaaggcaactggcagcaagtgttggtgtttaaccgcactaagcatggtgctaaccat
ttggctgaacaactgaataaagacggcattaccgcagcggcaattcacggtaataagagc
cagggtgcacgtactcgtgcattggctgattttaaagacggtaaaatccgtgtactggta
gccactgatattgctgcccgtggtctggatattgatcagttaccccatgtggttaactat
gaattacctaacgtaccagaagattacgtgcaccgtatcggccgtactggccgcgcggaa
cgcacaggtgaagcgatttcactggtttgcgttgatgagcataaactgttgcgtgatatt
gagcgtttactgaagcgtgaaattccgcgcatcgcgctggatggctatgagccggatcca
agcatcaaagctgatccgattcaaaatggccgtcagggtcgtggtgcacaacgtccagga
atgggccgtggtagtagcgcgggtcgcccacagaatggcggtggtgctgccggtcgcggc
gatagccgtaacagtcgcccacgtagccaggctgatggtcaacgtcgccctgctggccct
tcttcacgtggtcgtagcagtaaacccggcgaataa
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