Yersinia intermedia: CH53_3340
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Entry
CH53_3340 CDS
T03608
Name
(GenBank) hypothetical protein
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
yin
Yersinia intermedia
Pathway
yin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CH53_3340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_3340
Enzymes [BR:
yin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CH53_3340
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CH53_3340
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH53_3340
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH53_3340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
AJJ19734
LinkDB
All DBs
Position
complement(3738580..3740010)
Genome browser
AA seq
476 aa
AA seq
DB search
MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQP
EAVMITGITPQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAH
DAMSDVHATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARG
NTSWVAPLAWHPENKNAVIMCDLAGDMSPLLALDSDTLRERLYTRRDKLNTQDAAVPLKL
VHINKCPVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVS
DDVDAQLYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEALFFRFRARNYPNTLT
DSEQQRWLAHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLVS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaaaataagcaacctactttctacattcacgattatgaaacctttggtcag
cgcccggcattggaccggccagcgcagtttgccggggtgcgtaccgatttggatttcaat
attatcgaggaaccactggtcatttactgtgcacctgccgatgactatttgccacagcca
gaggccgtgatgataaccggtatcacgccacaacacgctttagctaatggtgtgaatgag
gcggagttttcccgccaaatccatcaggctttcaatgtgccgggcacttgtatcctcggt
tacaacaatattcgttttgatgatgaagtcagtcgcaatattttctaccgcaacttttac
gatccctatgcctatagctggcaaggggggaattcccgttgggatctgttagatgtgatg
cgggcgtgttacgccctgcgcccggaaggtattgtctggccggaaaatgaagatggcctg
ccgagtttcaagctcgaacacctgaccaaagccaatggcgtggagcatttgcatgcccat
gatgcaatgtcagatgtgcatgccaccattgcgatggcgaaattggtcaaacaggcgcaa
ccccgcctattcgactatctatatcaacaccgcagtaagcataaaataaatgccttaatt
gatatcgctgagatgacgccgctggttcatgtctctggcatgtttggcgcagctcggggc
aataccagttgggttgcgccgttggcatggcatcctgagaataaaaatgcagtgattatg
tgtgatctggccggtgatatgtcgccattactggcgttggatagcgatacactgcgcgag
cgcctgtatacccgccgcgacaaactcaatactcaagatgcagcagtgccactcaaactg
gtacatatcaataaatgcccggtactggcccctgcaaaaacgttattaccagaaaatgct
gaacgtttgggcattgatcgccaacgttgtctgcaaaatttgcaattattgcggcaaaac
ccgcaagtacgcgaaaaagtggtggcactgttcgccgaagccgaaccctttgcggtatcc
gatgatgtcgatgcacaactgtataatggcttcttcagcgatgccgaccgcgccaccatg
aagatcattttacaaactgaaccgcaaaacttgcccgcgctggatttaacctttcaagat
ccacggctggaagcgctatttttccgtttccgcgcccgtaattaccccaatacgctaacc
gacagtgagcaacagcgttggctagcgcatcgccgcgaagccctcaatcctgaaagagtg
caggactacgtgctgcaactggagcaattctataaccagtatgaagacgataaagagaag
ttagctctgctgaaagcactgtttgagtatgccagaggcttggtaagctag
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