Yersinia intermedia: CH53_3820
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Entry
CH53_3820 CDS
T03608
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yin03016
]
CH53_3820 (rnd)
Enzymes [BR:
yin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CH53_3820 (rnd)
Transfer RNA biogenesis [BR:
yin03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CH53_3820 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AJJ21125
UniProt:
A0A0T9LP06
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All DBs
Position
4237180..4238301
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AA seq
373 aa
AA seq
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MNYQLITTNSALQQVCEQARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
TEWQPFSELLQDLNVVKYLHAGSEDLEVFLNAFSRMPTPMIDTQILAAFSGRTLSCGFAM
LVNEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAI
DECQLLCRRRSETLDPELAYREITNAWQLRGQQLACLQKLAAWRLRQARERDLAVNFVVR
EENLWQVARYQPTSLGELDSLGLSGQEIRYHGRILLALVAEGNAVPEEQLPQPVANLIDQ
PGYKKVFKDIKALILSVSERSGLSSELLASRRQINQLLSWHWKLKSTDTQPELLSGWRGD
LLSLELTEILKQY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacgaccaatagtgcgttgcagcaggtctgcgagcaagcccgg
acacatgctcatgttgcgttggatacggagtttgtcagaacgcgcacctactatcctcag
ttgggcctgattcaactgtatgacggtgaacaactttcactcattgaccccttacccatt
actgaatggcaacctttcagtgagttactgcaagatttgaatgtggtgaaatatctgcat
gctggtagtgaagatctcgaggtatttttaaatgcctttagccggatgccgacgccaatg
atagatactcagatattggcggcattttctggccgaaccctatcttgcggttttgccatg
ctggtaaatgagtttgaaggtgtcgagttagataaaagtgaatcacgtaccgactggatt
gcccgcccactcagtgaaaagcaatgtgattacgccgccgccgatgttttctacctatta
cccttggcagctaaattagttgaagccactgaagccgcagggcgtatggatgcggcaata
gatgaatgccaattgctgtgtcgccgccgcagtgaaacacttgacccagagcttgcctat
cgtgagataacgaatgcctggcagttacgcggccagcagttggcatgtttgcagaaactg
gcggcatggcgcttgcgccaagcgcgtgagcgtgatctggcggttaactttgtggtgcgt
gaagagaacctgtggcaagttgcccgttatcagccaacatcgttgggtgagctagattcc
ctgggcctgagtgggcaggagattcgctatcatgggcgtattttgttggcgctggtggct
gaggggaatgctgtaccggaagagcagctcccgcaaccggtggctaacctgattgaccag
ccaggctacaagaaagtctttaaagatattaaagcgttaatcctgtcagttagtgagcgt
agcgggttgagtagtgagttactggcgtcgcgccgtcaaataaaccaattactcagttgg
cattggaaactaaaatcaacggatacgcagcctgaattattaagcgggtggcggggcgat
ttgttatcactggaattgactgagattttgaagcagtattaa
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