Yersinia intermedia: CH53_3927
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Entry
CH53_3927 CDS
T03608
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yin03016
]
CH53_3927 (rnb)
Enzymes [BR:
yin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH53_3927 (rnb)
Transfer RNA biogenesis [BR:
yin03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CH53_3927 (rnb)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AJJ20542
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All DBs
Position
complement(4357057..4358991)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIVPDHPLLRDAIQCRPDRELTH
DFQNGDWAVAEMRRHPLKGDRAFNADLTAFITNGEDHFVPWWVTLARHNLEREAPVMVES
ALPDCDLAREDLTALHFVTIDSNSTEDMDDALYVEDNGDGSLLLTIAIADPTAYVDENSE
LDLIARKRAFTNYLPGFNIPMLPRHLSDNLCSLRPNERRPVLVCRVTIAADGALGDDIRF
SSAWVESKAKLVYDEVSDWLDGNMGWQPPDADIAEQILLLKRVCEARSNWRQEHALVFKD
RPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCAAIALRDNLGFGIYNVHTGFD
PALVEQAATVLQANGVEADPQALLTLPGFCELRRHLDALPTQFLDSRIRRFQTFAEISTV
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQQAEKPQDEITVQLAERRRLNRM
AERDVGDWLYARYLQPQAGTDTRFPAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVVARPVV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagaccccg
cgcgttgaaggcgtggttaaaggtactgagaaaggctttggctttcttgaggtagatggg
cagaaaagttattttattccgccgccgcagatgaagaaagtcatgcacggcgatcggatt
attgccaccttgcacacggataaagatcgtgaaattgctgagccagaaacattggtcgag
ccatttttatcccgctttgtcggtcgcgtacaacgaaaagatgatcgtctgtctattgtg
ccggaccacccattgctgcgtgatgccatccaatgtcgtccagaccgtgagttaacccac
gatttccaaaacggtgattgggccgtggctgaaatgcgccgccacccattaaaaggcgat
cgcgcttttaatgctgatctgacggcatttattaccaatggcgaagatcatttcgtgcct
tggtgggtgacattagctcgccataatctggagcgtgaagccccggttatggtcgaatcc
gccttgccagactgcgacttagcacgcgaagatctgaccgctcttcattttgtcactatc
gacagcaacagcaccgaagatatggatgatgcgttgtatgtagaagacaacggtgacggt
tccctgctgttgaccattgccattgcggacccaacggcctatgtcgatgaaaacagtgag
ttggatttaatcgcccgtaaacgtgcatttactaactatctgcctggcttcaacatcccg
atgctgccacgccacttgtctgacaacctttgctcattgcggccaaatgagcgccgcccg
gtattggtatgccgtgtgactatcgccgctgatggggcgttaggtgatgatattcgcttc
tcctccgcttgggtcgagtctaaggccaaactggtttatgacgaggtttctgactggttg
gacggcaacatgggttggcagccacctgatgcggatattgccgagcaaattctattactt
aaacgggtttgcgaagcgcgtagcaactggcgtcaagagcatgcgctggtgtttaaagac
cgcccagattaccgcttcctattgggtgagaaaggcgaagtgctggatatcatcgttgag
caccgccgtattgctaaccgtattgttgaagagtgcatgattgccgccaacgtctgtgct
gctattgcgttacgcgataatttgggctttggcatttataacgtgcataccggttttgat
ccggccttggttgaacaggcagcgaccgtgttgcaagccaatggtgtcgaggctgacccg
caggctctgctgaccctgccaggcttctgtgagttgcgccgccatctcgatgcgttgcca
acccagttcctcgacagccgtatccgccgcttccaaacctttgccgaaatcagcaccgtt
cccggcccacactttggtttagggctagaggcctatgccacttggacttcacctattcgt
aaatacggtgatatggtcaatcatcgcctgctcaaagctattattaccggccagcaagca
gagaaaccacaagatgagataaccgtgcagttggctgagcgccgccgcctgaaccgcatg
gctgaacgcgatgtcggtgactggctgtatgcccgttatctacagcctcaagccggtact
gatacccgcttcccggcggaaatcattgatgtcacccgtggtggcctgcgtgttcgtttg
ctggataatggcgctgtggcctttatccctgcaccgtttattcatgcagtacgtgatgaa
atggtctgcagtcaggaaacaggtaccgtgcaaattaaaggtgaaacggtttatagccaa
agcgataaaatcgaagtgcgtattgccgaagttcgcatggaaactcgcaatgtggtggcc
cgcccggtggtttga
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