Yersinia intermedia: CH53_3941
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Entry
CH53_3941 CDS
T03608
Name
(GenBank) type I secretion system ATPase family protein
KO
K12531
ATP-binding cassette, subfamily B, bacterial RtxE
Organism
yin
Yersinia intermedia
Pathway
yin02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CH53_3941
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
yin02000
]
CH53_3941
02044 Secretion system [BR:
yin02044
]
CH53_3941
Transporters [BR:
yin02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
CH53_3941
Secretion system [BR:
yin02044
]
Type I secretion system
RTX toxin transporter
CH53_3941
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
Peptidase_C39
AAA_22
AAA_25
AAA_18
AAA_16
Rad17
AAA_29
AAA_14
PRK
AAA_28
RNA_helicase
AGTRAP
SbcC_Walker_B
CoaE
RsgA_GTPase
KAP_NTPase
Mg_chelatase
MeaB
nSTAND3
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AJJ19902
LinkDB
All DBs
Position
4376079..4378199
Genome browser
AA seq
706 aa
AA seq
DB search
MMNSTSTQIIQPLSALARAAACFDLAVESSQLAHQLGLAPEKIDDIAVCRCAGWIGLRAR
KVSQSYERLKHLALPILFSDGDQWYVLLALNEQGAVVYFAANGQQQQISQQALANLWGGE
AILLAKAELRGQKKASFGFSWFMPVITKYRHQLRNIVLVSLLLQGILLVTPMLFETVIDK
VLVSRGVGSLVVLGSAMIALAIAEPCYTFLRGWLFSHLSSRVGAELNTRLYRHLLGLPLA
YFGAQQTGQTIAKVQEMEQIRSFLTGSALTMLLDLIFVSIFIAVMFCYSSQLTWIVLFSL
VCYLLFWWAIGGVLRKRVECQYEASADNTSFLTEAISGLETIKTTATESQFNRGWQQSLA
RYVRASFAGARMANIAEQGITFINKVTSAIVLWFGVKLVLAGGLSPGQFIAFSMFSGYVT
QPILRLAQIWQDFHHTQVALKRIGTILDYPTEPGSAGLSSSNEWVGRLTFKQVRFRYRPD
TAEVLQNLNLDIAGGEFIGITGPSGCGKSTLTKLLQRLYLPQHGQILVDGQDLAITDATA
LRCQMSVVLQDSILFSGSLRDNICQCRPNADDTLVEKIARQAGAHDFIMALPQGYQTQVG
ERGSMLSGGQRQRVALARALMADPKILILDEATSALDYESEAAIMRQLPEIIRNRTVICI
AHRLNTLRQCHRILVLGYGQVLEQGSHQALLAQGGAYARLWQLQTE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattcaacatcaactcagataatccaaccactgagcgcactggcccgggctgcc
gcgtgttttgatctcgccgttgagtcttcgcagttggcacaccaactgggattagcaccg
gagaaaatcgatgatattgcagtgtgtcgttgcgctggttggataggtttacgggcaaga
aaagtcagccagtcatatgaacgtttgaaacatctggctctgcctatcttattcagcgat
ggggatcagtggtatgtgctactggccctgaatgaacagggcgcggtggtttattttgcc
gccaatggacagcagcagcaaatcagccagcaggcgctagccaatttgtggggtggtgaa
gccattttattggcgaaagcagaattacgagggcagaaaaaagcctcttttggctttagc
tggtttatgccagttattactaaataccgtcatcaattgcgtaatatcgtcttagtctca
ctgttattgcagggtattttgctggtgaccccaatgctattcgaaacggtgatcgacaaa
gtcttggtgagccgtggggtaggcagcttggtggtcttaggcagcgccatgatagctctg
gcaattgctgaaccctgttacactttcttgcgcggctggctgttttcacatctctccagc
cgagttggtgcggaacttaacacccgtctttatcgccatttactggggttaccactggct
tactttggcgcacaacaaacagggcaaactatcgctaaagtacaagaaatggagcaaatc
cgcagctttctgacgggatctgcattaaccatgttgctggatctgatctttgtcagcata
tttatagccgtgatgttttgctacagcagtcaactgacatggatagtcctgttttctctg
gtttgttatcttctgttttggtgggcaattggcggagtattacgtaagcgggttgagtgt
cagtatgaagccagtgcagataatacatcgtttttaactgaagcgattagtgggttggaa
acgataaaaaccacagcaaccgaaagccagtttaatcgtggttggcagcaatcactcgca
cgctacgttcgggcgtcatttgctggtgcgaggatggcgaatattgctgagcaaggtatt
acatttatcaacaaagtcacgtctgccattgtgttgtggtttggcgttaaattggtattg
gctggggggctaagtccaggtcaattcatcgcgttttcaatgttttcgggttatgtaact
caacccattttgcgtttggcgcagatatggcaagatttccaccacacacaagttgctctg
aaacgcattggtactattctggattatccaacggagccagggagtgccggattatcgtca
agtaatgagtgggtagggcgtttgacgtttaaacaggtgcgctttcgctatcggccagat
accgctgaagttttacaaaatctcaatttggatatagccggtggggaatttattggtatt
accggcccatctggttgtggcaaatcaacgctaacgaagttactacagcggttatatctt
cctcaacatgggcagattctggtagacgggcaggacttggcgattactgatgccacagct
ttgcgctgccaaatgagtgtggtattgcaagatagcatcttgttttctggtagcctgcgg
gacaacatctgccagtgccgacccaatgctgatgatactctggttgagaaaattgcccgg
caggcgggggcgcatgattttattatggctttacctcagggctatcaaacccaggttggg
gaacgaggtagtatgttgtctggcgggcagcggcagcgggttgctctggcgagggcgcta
atggcggatcctaagatcttgattcttgatgaagcaaccagtgctctggattatgaatct
gaggcggcaattatgcgccaattgcctgagattatccgtaatcgcactgtaatctgcatt
gctcatcggttgaatacattgcgtcaatgtcatcgtattttggtattagggtacgggcaa
gttttagaacaaggcagtcatcaagcgttacttgctcagggaggggcctatgcacggttg
tggcagttacaaaccgaataa
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