Yersinia intermedia: CH53_3988
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Entry
CH53_3988 CDS
T03608
Name
(GenBank) AAA domain family protein
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
yin03000
]
CH53_3988
Transcription factors [BR:
yin03000
]
Prokaryotic type
Helix-turn-helix
Other families
CH53_3988
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
Mg_chelatase
AAA_5
AAA_2
GAF_3
HTH_8
AAA_16
AAA
AAA_19
MCM
Motif
Other DBs
NCBI-ProteinID:
AJJ20852
LinkDB
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Position
complement(4431697..4433238)
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AA seq
513 aa
AA seq
DB search
MSLSIQSLAKIAIELQGGLSGQDRFQTLVSSLRQLLQCDASALLRYEHQLFRPLAIDGLS
PDVLGRRFSLSSHPRLEAIARAGNVVRFPTDSHLPDPYDGLIPGHDELKVHACIGLPLFA
DQTLIGALTFDSMNPLQFDGFSDEELKLIGVLAASALNNALLVDVLEKQALPTVSSLSIQ
KQATSSSENEMIGLSPLILQLKHEIGVVAGSELNVLITGETGVGKELVAQAIHHLSPRAT
KALIYLNCAALPENVAESELFGHVKGAFTGAIHDRTGKFEIADNGTLFLDEIGELSLVLQ
AKLLRVIQYGDLQRVGDDSTKRVNVRIIAATNCDLKQAVIEGRFRVDLFHRLSVFPLHVP
PLRERKGDIVLLAGFFVERIRKKLGLQQLGIPATTLTLLENYRWPGNVRELEHAIYRAAV
LARASQPATESPQLHADLFNITVTVIPGVSPIAASEDQRTTPVDLQAATRDFQRQVITQV
LQANEMNWSACARALNLDAGNLHRLAKRLGIKR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatccattcagtcactggccaaaatagccattgagctacagggcggcttatca
gggcaagatcgttttcagacgttagtcagtagcttgcggcaattactgcaatgcgatgcc
tcggcacttttgcgttatgaacatcaattgttccggccattggctattgacggtttatct
cctgatgtattggggcggcgtttttcgttgtcatcccatccacgattagaggctattgcc
cgcgcagggaatgtggtccgattcccgactgacagccatctccctgacccctatgacggt
ctgatcccagggcatgatgagcttaaagtccatgcctgtattggtctgcccttgtttgct
gatcagacacttattggtgcattaacttttgacagtatgaacccgctgcaatttgatgga
ttcagtgatgaagagcttaaactgattggtgtattagcggcctcggcattgaataatgca
cttttagtcgatgtgttggagaagcaagcgctccctacggttagttcattaagcatccaa
aaacaagccacctctagctcggaaaacgagatgattggcctgtcaccgttgatactgcaa
ctaaaacatgagataggcgtggtagcgggttcagaactgaatgtgctaatcactggggag
acgggggtcggtaaagagttggttgctcaggcaattcatcatttatcaccgcgcgctact
aaggcattgatctatttaaactgtgccgccttgcctgagaatgtggcggagagcgaatta
tttggtcatgtgaagggggcttttactggtgcaatacatgaccgaaccggtaagtttgaa
attgccgacaatggcacgctatttctcgatgagattggcgagctttctttggtacttcag
gccaaattactccgtgttattcagtatggcgacttgcaacgtgtcggtgacgacagtacc
aagcgggtgaatgttcgtattattgctgctaccaattgtgatcttaaacaagcagttata
gaagggcgctttcgcgttgatctgtttcaccgtttgagtgtgttcccattacatgttcca
ccgttacgggaacggaaaggggatattgtcctgttagccggattttttgtagagcggata
agaaagaaactggggctgcagcagttgggcatcccggcaaccacactcaccctgctagag
aattaccggtggcccggaaatgtgcgtgaattggaacatgctatttatcgtgctgcggta
ctggcgcgcgcctcacaaccggcgacagaatctccgcaacttcatgctgatttatttaat
attacggtcactgtcatacccggtgtgtcaccgatagccgctagcgaggatcaacgcacc
acacctgtagacctacaagcggcgacccgtgattttcagcggcaggttataacgcaggtt
cttcaggcgaatgagatgaattggtcagcatgtgctcgtgcgctaaaccttgacgcaggt
aacctccatcgtcttgccaaacggctcggcatcaaacgatag
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