Yersinia intermedia: CH53_4271
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Entry
CH53_4271 CDS
T03608
Symbol
kdgR
Name
(GenBank) pectin degradation repressor protein kdgR
KO
K19333
IclR family transcriptional regulator, KDG regulon repressor
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
yin03000
]
CH53_4271 (kdgR)
Transcription factors [BR:
yin03000
]
Prokaryotic type
Helix-turn-helix
IclR family
CH53_4271 (kdgR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
TrmB
HTH_24
HTH_5
MarR_2
Rrf2
Fe_dep_repress
Mga
HTH_45
PadR
HTH_11
MarR
Motif
Other DBs
NCBI-ProteinID:
AJJ18553
UniProt:
A0A0T9MNH5
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All DBs
Position
complement(4704825..4705616)
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AA seq
263 aa
AA seq
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MAIADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMPKSTVYRFLQTMKSLGY
VAQEGESEKYSLTLKLFELGAKALQNVDLIRSADIQMRELSNETRETIHLGALDEDSIVY
IHKIDSMYNLRMHSRIGRRNPLHSTAIGKVLLAWRDRGEVEEILSHIEFTRSTKHTLDSA
AALLPVLDLVREQGFGEDVEEQEEGLRCIAVPVFDRFGVVIAGLSISYPTLRFSEDSKSN
IVKSLHRAARNISEQMGYREYPF
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggctattgcagatctagataaacagcccgactctgtgtcgtcggttctgaaggttttt
ggcatcttacaagcattgggtgaagagcgggagattggtattaccgagctttctcaacgg
gtaatgatgccaaaaagtacggtttaccgctttctccagaccatgaaatccttgggatat
gttgcccaggaaggcgaatcagagaaatactcccttacgctgaagttgtttgagctgggg
gctaaagcgttacaaaatgttgatttgattcgtagcgcagatatacagatgcgtgaatta
tctaatgaaactcgtgaaactattcacttgggcgcattggatgaagacagcattgtttat
attcataaaattgattctatgtataacctgcggatgcattcccgtattggtcgtcgtaac
ccactgcacagtactgcaattggtaaagtgttattggcgtggcgtgaccgtggtgaagta
gaggaaatcttgtctcatatcgagttcacccgtagcactaaacacactctggatagcgcg
gctgcattattgccagtgctggatctggtgcgtgagcagggctttggcgaagatgtcgag
gagcaagaagaaggtttacgttgtatcgctgtacctgtttttgaccgtttcggtgtagtg
atcgcgggtttaagtatttcatacccaacactgcgtttctctgaagacagcaaaagtaat
attgttaaatctttgcatcgcgcggcacgtaacatctcagaacaaatgggttatcgcgaa
tatcctttctga
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