Yersinia intermedia: CH53_928
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Entry
CH53_928 CDS
T03608
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yin03016
]
CH53_928 (truD)
Enzymes [BR:
yin01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
CH53_928 (truD)
Transfer RNA biogenesis [BR:
yin03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CH53_928 (truD)
Prokaryotic type
CH53_928 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AJJ21264
LinkDB
All DBs
Position
complement(1048646..1049695)
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AA seq
349 aa
AA seq
DB search
MDMENLTWLHGKPKASGILKANPEDFVVVEDLGFEPDGEGEHLLIRIRKNGCNTQFVADY
LARFAKLHPRLVSYAGLKDRHAVTEQWFCLHLPGKEAPDLATFELEGCEVLEAVRQKRKL
RIGSLKGNAFTLVLRHITDRQDVEQRLQQIAAQGVPNYFGSQRFGRGGNNLVQARLWANN
EIRVKERSKRSFYLSASRSAMFNLISSCRLSQQQATTVLAGDALQLSGRGSWFVAGADEL
AALQQRVDAGELNVTAPLPGDGELGTQGEALAFEQSCLVDQSELLALIKRERVEGARRAV
LLKPQNMVWNWWDDVTLELSFWLPAGSFATSVVREIMNQDNADAADIAE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaaaatctaacctggctgcacggcaaacctaaagcgagtggcattttaaaa
gccaatcccgaagattttgtggtggtcgaggatttaggctttgaaccggatggtgaaggc
gagcatttgctgatccgtattcgcaaaaatggctgtaatacgcaatttgttgctgactat
ctggcgcgttttgccaagcttcatccgcgtttggtgagctatgcggggttgaaagatcgc
cacgccgtcacagagcagtggttctgtttacacctaccgggcaaagaagcaccggatctc
gctacgttcgagctggaagggtgtgaagtgctggaagcagtgcggcagaaacgtaagctg
cgcattgggtcactgaaaggcaatgcttttaccctggtattgcgccatatcactgatcgt
caggatgtagaacaacgtttgcaacagatagccgcacagggcgttcccaactatttcggc
agccagcgctttggccgtgggggtaacaatctggtgcaggctcgcctgtgggcgaataat
gaaattcgggttaaagagcgcagtaaacgcagtttttacttgtccgccagccgtagtgca
atgttcaacctgattagcagttgccgtttgtcacaacagcaagcaactacggtgctggca
ggtgacgccttacagttatccggtcgcggcagttggtttgtggccggcgctgatgaatta
gcagcgttacagcagcgcgttgatgcgggtgaattgaatgtgacagcgccactaccgggc
gacggtgaactgggaacgcagggcgaagcattggctttcgagcagtcatgtctggtggat
caaagcgaattactggcgttgattaagcgtgagcgtgttgaaggtgcccgccgggcggta
ctactaaaaccacagaatatggtgtggaactggtgggatgacgtaacccttgaacttagt
ttctggttacccgcaggcagttttgccaccagtgtggtaagagaaataatgaatcaggat
aatgccgatgctgcggatattgctgagtaa
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