Yersinia kristensenii: HRD70_01665
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Entry
HRD70_01665 CDS
T08672
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yki
Yersinia kristensenii
Pathway
yki02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HRD70_01665 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yki03021
]
HRD70_01665 (rpoD)
Transcription machinery [BR:
yki03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HRD70_01665 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
PAC1
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QKJ14011
LinkDB
All DBs
Position
404463..406304
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLINGFVDPNAEEDIAPTA
THVGSELSTEERDDDDDKEDEDEEEEEDDNSIDPELARQKFSELREQYENTRMAIKKNGR
SHASAAAEILNLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKK
NFVTLFASNETSDTWFAAAVAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcccct
gatgctgatgatttaatgctggccgagaacaccactgataccgacgatgacgcagctgaa
gctgctgcacaagtgttgtccagtgttgaatccgaaatcgggcgtactaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgttgagctattgacgcgtgaaggcgagattgat
atcgccaaacgtatcgaagacggtatcaatcaggtgcagtgttctgttgctgaataccct
gaagcgattacttatctgttggaacaatatgatcgcgtcgaagcgggtgaagcccgttta
tccgacctaatcaacggctttgtcgatcccaatgctgaagaagatattgcgccgacggcg
actcacgttggttctgaattatccactgaagaaagggatgatgacgacgacaaagaagat
gaagacgaagaagaagaagaagacgacaacagcatcgatccagagttggcacgccagaaa
ttcagcgaattgcgtgaacagtatgaaaacacacgcatggcaatcaagaaaaatggccgt
agccacgccagtgctgctgccgagattctgaatctttctgaagtgttcaaacagttccgt
ctggtaccgaagcagttcgactatctggtcaacaacatgcgagccatgatggatcgcgtt
cgtactcaagaacgtatcatcatgaagctgtgtgttgagcagtgcaaaatgccgaagaaa
aacttcgttaccctgtttgctagcaatgaaaccagcgatacctggtttgcagcagcagtc
gctatgggtaaaccttggtctgaaaaactgaaagatgtttcggacgatgtgcaacgtagc
ttgcagaaactgcgtcagatcgaagaagaaaccggcctgaccattgagcaagtgaaagac
atcaaccgccgtatgtctatcggtgaagcaaaagcgcgtcgtgccaagaaagaaatggtc
gaggctaacctgcgtctggttatctctattgcgaaaaaatacaccaaccgtggcctgcaa
ttccttgatttaattcaggaaggtaacatcggtttgatgaaggcagtagataaattcgaa
taccgtcgtggttataagttctcaacctatgcaacttggtggattcgtcaggctatcacc
cgctctatcgcggaccaggcacgtaccattcgtattccggtgcatatgattgagaccatt
aacaaactcaaccgtatttcgcgccagatgctgcaagagatgggccgtgaaccaacaccg
gaagagctggctgaacgcatgctgatgccggaagacaaaatccgtaaagtgttgaagatt
gcgaaagagccaatctcaatggaaactcctatcggtgatgatgaagattcacatctgggt
gatttcattgaagataccactctggagctgccgctggactctgcaacctctgagagcctg
cgctctgccactcacgatgtgttagctggcctaacagcgcgtgaggcgaaagttctgcgt
atgcgtttcggtatcgatatgaacactgaccacactctggaagaagtgggcaaacagttc
gacgtcacccgtgaacgtatccgtcagatcgaagctaaagcattgcgtaaattgcgtcac
ccaagccgctctgaagtgctgcgcagcttcctggacgattaa
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