Yersinia kristensenii: HRD70_02760
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Entry
HRD70_02760 CDS
T08672
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
yki
Yersinia kristensenii
Pathway
yki03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HRD70_02760 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yki03021
]
HRD70_02760 (rpoB)
03400 DNA repair and recombination proteins [BR:
yki03400
]
HRD70_02760 (rpoB)
Enzymes [BR:
yki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HRD70_02760 (rpoB)
Transcription machinery [BR:
yki03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HRD70_02760 (rpoB)
DNA repair and recombination proteins [BR:
yki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HRD70_02760 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
QKJ14198
LinkDB
All DBs
Position
complement(655977..660005)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTTQILDLFFDKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YIDENTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEADKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagatcctgaaggacagcacggtctggaagcagccttccgttctgtgtttccaatccag
agctacagcggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtattt
gacgtcaaagagtgccaaatccgtggtgtgacttattctgcaccgctgcgcgttaaactg
cgcctggtaatctatgagcgtgaagctccggaaggtacggtcaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgaccgaaaacggtacctttgtcattaacggt
actgagagggttatcgtatctcagctgcaccgtagtcctggcgtattctttgacagcgat
aagggtaaaacccattcctcgggtaaagtgctgtataacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagtttgacccgaaagataacctgttcgtccgtattgaccgt
cgtcgtaaattgcctgcaaccatcattctgcgtgcattgaatttcaccacaacacagatc
cttgatctgttctttgacaaagtggtctttgagattcgtgacaacaagctgcagatggaa
ttggttccagagcgtctgcgcggtgaaacggcatcctttgatattgaagcgaatggcaaa
gtttacgtcgagaaagcgcgtcgtattactgcacgtcatattcgccagcttgaaaaagac
ggtattgatcgcatcgaagttccggttgaatacattgccggtaaagtggtcgcaaaagac
tacattgatgagaacaccggtgagctaatctgtgcagccaatatggagctgtcactggat
ttactggcgaagttgagccagtctggtcacaagcaaatcgaaacattattcaccaacgac
ctggatcacggtgcttatatctccgagaccctgcgtgttgacccaaccagcgatcgtctg
agcgctttggttgagatctaccgcatgatgcgtcctggtgagccaccaacacgtgaagca
gctgaaaatctgtttgagaatctgttcttctctgaagaccgctacgatttgtctgcggtt
ggccggatgaagttcaaccgttctctgttgcgtgacgagatcgaaggttccggtatcctg
agcaaagaagacatcacagaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacttaggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgtaggtctggttcgtgttgagcgtgcagttaaagagcgtttgtct
ctgggcgacctcgacacactgatgcctcaggacatgatcaacgctaagcctatctcggct
gcggtgaaagagttctttggttccagccagttgtcacaatttatggaccagaacaacccg
ttgtctgagattacgcataaacgccgtatctctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaatgagtatggtttcctggaaactccttatcgtcgcgtacgtgatggtgtggtgacc
gatgaaattaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgaagacggccgcttcattgaagacttagtcacttgtcgtagcaaaggc
gaatcaagtctgttcagccgcgatcaagttgactacatggacgtttccactcaacaggtg
gtgtccgttggtgcttctctgattccattcttggaacacgatgacgccaaccgcgccttg
atgggtgcgaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgttagtg
ggtaccggtatggaacgtgcggtagcggttgactcaggggtaacctctgtagctaaacgt
ggcggtactgttcagtatgtagatgcatctcgtatcgtgattaaagttaacgaagacgaa
atgtacccgggcgaagcaggtattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggt
gacgtgctggcagatggcccatcgacagacctgggcgaactggcattgggtcagaacatg
cgtgtagcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgag
cgcgtggtgcaagaagatcgtttcactaccattcacattcaagaactggcctgtgtgtct
cgtgacaccaagctggggccagaagagatcactgctgatatcccgaacgtcggtgaagct
gcgctctccaaactggatgaatccggtatcgtatatatcggtgctgaagtgactggcggt
gacattctggtgggtaaggtgacacctaaaggtgaaacccagctgacgccagaagagaaa
ctgttacgtgcgatctttggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaagtctttactcgcgatggcgtagaa
aaagacaaacgtgcgttagaaatcgaagagatgcaactgaagcaggccaagaaagacctg
actgaagaattgcagatcctggaagctggcctgtttgcgcgtatccatgcagtactggtt
tctggtggcatcgaagctgacaagctgagcaagttaccacgtgatcgctggctggaactt
ggcctgaccgacgaagacaagcaaaaccagctggaacagttggcagagcagtacgacgaa
atgaaatccgaattcgagaagaagatggatgccaagcgtcgtaagatcacccaaggtgat
gatttggcaccaggcgtgctgaagatcgtcaaggtgtatctggcggttaaacgtcagatt
caaccgggtgataagatggctggtcgtcacggtaacaaaggtgttatctccaagattaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ttgggcgtaccttcgcgtatgaacatcggtcagattttggaaacccacttggggatggca
gcgaaaggcattggcgagaaaatcaacgccatgctgaagaagcaggaagaagttgccaaa
ctgcgtgagtttatccagaaagcctacgatctgggcgacaacgtttgtcagaaagttgat
ctgagcaccttcaccgatgacgaagtattgcgtctggctgagaacctgaaaaaaggtatg
ccaatcgcaacaccagtgttcgatggtgcgacagagaaagaaatcaaggaactgttacag
ctgggtggcctgccaacttctggtcagattactctgtttgacggccgtaccggtgagcag
ttcgagcgccaggttactgtcggctacatgtatatgctgaaactgaaccacttggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggcgccgcgtacacattgcaggaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaagagtaa
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