Yersinia kristensenii: HRD70_04730
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Entry
HRD70_04730 CDS
T08672
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
yki
Yersinia kristensenii
Pathway
yki02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HRD70_04730 (pdeR)
Enzymes [BR:
yki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
HRD70_04730 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
RIP
Motif
Other DBs
NCBI-ProteinID:
QKJ14549
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All DBs
Position
complement(1098571..1100565)
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AA seq
664 aa
AA seq
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MFEDQDTSILNTYFGTHSPFWRLAFDSQALELSAIKGTTNIAIPLNSVQTMKIRGLTGIT
ASLDIEIDIYGHPLHLHLVGRKTNEKEWGGTASAYADTESVARDLVMSLSFAEQVVSEAN
SVIVILDKDGCVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTVKEGASSRKNIEGFFQRGA
SYEVERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILANTDM
ITGLPNRHAIHERINSVIQTRGDTSVGIIYLDLDNFKKVNDHYGHMFGDRLLKDVSLAIL
SCLGDNEMLARLGGDEFIVLVESATMNLLETTTQRILNRMKLPFRVGLIEVYTGCSIGIA
LCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKVSEYVWLDTNLRKGLEQHQ
LQVYYQPKISTKTGKVHSVEALVRWLSPERGLISPLEFISYAEESGLIKPLGKWVLQTSM
QQAVEWRKRGINLRVAVNVSARQLMDDTIVTSFIESLEASELESSLVDVELTESCLIDNE
DAAINIMKQLRHLGVQIHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHIDTNPISQSLV
RAIIVVAEALKMQVIAEGVETKEEEEFLDSIGIDEKQGFLYAKPMPADELEHWLVTKHPH
LSLD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaagaccaagacacgtcgatcctcaatacttactttggcactcacagtccattt
tggcggcttgcttttgatagccaagctttagagttgtctgccattaaagggacaacaaat
atcgcaataccccttaattcagtgcaaacaatgaaaatccggggcttaactggaattact
gccagtttagatattgaaattgatatttatggtcaccctcttcatttacatcttgtcggc
cgcaaaactaatgagaaagaatggggaggaacagcatcagcctatgctgatactgaatct
gtagcgcgtgatctggtcatgagcctttcctttgcagagcaggtcgtttctgaagccaac
tcagtgattgttattcttgataaagatggttgcgtacaacgatttaaccaccttagcgaa
gaatataccggtaagaaagaacaagatgttattggtaaaaatgtctacgacttatttatg
acagtcaaagaaggggcgtcgtcacggaaaaatattgagggcttttttcagcgcggtgca
tcttatgaggtagagcgttgggttaataccgtaaaaggaaagcgcctgtttttattccgc
aataaatttgttcacagtggtagtggtaaaaacgagcgctatctcatctgttctggcact
gatattaccaaagaaagacgcgctcaagaacgccttaggattctggctaataccgatatg
attactggtttacctaatcgccatgctattcatgaacgcataaacagcgtaatccaaacc
cgtggggatacttcggtaggtattatttatctcgacctcgataatttcaaaaaagtgaac
gaccattacggccatatgtttggtgatcgattactgaaagatgtctcgttggcaatttta
agttgcctgggtgataacgaaatgcttgcccggctaggaggtgatgagtttattgttttg
gtcgaaagcgccaccatgaacttgcttgaaacaactacacagagaattctcaatcggatg
aaattacctttccgggttggattaatcgaggtatataccggttgttcaattggtattgca
ctatgccctgagcatggcgacacactggaaaatattattcgcagcgcagataccgctatg
tacaccgcaaaagaacatggaaaacaaacctattcaattttctcgcagcagatgaataaa
aaagtatccgaatatgtttggctcgataccaatttgcgtaaaggtttagaacagcaccaa
ttacaggtctattaccagcccaaaatatcgaccaaaacaggaaaagtgcacagtgtagaa
gcactcgtcagatggttatcgcctgagcgaggtttaatctcgcctctggagtttatctcc
tatgccgaagagtccgggcttatcaaaccgctgggtaaatgggtactgcaaacgtcgatg
caacaagccgtcgagtggagaaaacgcgggattaacctacgagttgcagtcaatgtttct
gcccggcaattgatggatgatactatcgttaccagttttattgagtctctcgaagccagc
gaactggaatctagcttggtcgatgttgaattaacggaaagttgcttaattgataatgaa
gacgccgctatcaatataatgaaacagctccgccacttaggtgttcaaattcacttagat
gattttggtactggttattcttcactctctcagttagcgcgcatccctattgatgccatt
aagctggatcaaagttttgttcgccatattgatactaatcctatttcacaatctctcgta
cgagctattatcgttgtcgccgaggcacttaaaatgcaagtgattgccgaaggagtagaa
actaaagaggaagaggaatttctggattctattggaattgatgaaaaacagggatttctt
tatgctaagccaatgcccgcagatgaactggagcattggctggtaacaaaacaccctcac
ctttcactggattag
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