Yersinia kristensenii: HRD70_07150
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Entry
HRD70_07150 CDS
T08672
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yki
Yersinia kristensenii
Pathway
yki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRD70_07150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yki03019
]
HRD70_07150
03009 Ribosome biogenesis [BR:
yki03009
]
HRD70_07150
Enzymes [BR:
yki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRD70_07150
Messenger RNA biogenesis [BR:
yki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRD70_07150
Ribosome biogenesis [BR:
yki03009
]
Prokaryotic type
rRNA helicases
HRD70_07150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
DRTGG
Motif
Other DBs
NCBI-ProteinID:
QKJ14970
LinkDB
All DBs
Position
1610682..1612655
Genome browser
AA seq
657 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPTLKAPQVLVLAPTRELAIQVAQALTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR
FLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NVERTMKLTIPEVQLPNAELLGERRLAKFAAKVGQQLESSDLDMYRALLAKLQPEEEFDL
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRERNDSRREPRSDNRDGG
ERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE
LPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGAGRSAGGER
REGAGAPPRRSFGSDRAPAGGGEQRRGNRDAQRPAAAPRRDDAAAPAAPARRRFGDA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttcc
gctctgactgatcttggttatgaaaaaccatctcctattcagttggaatgtattccacac
ctgttgaacggccgtgatgttctcggcatggcgcaaaccggtagtggcaaaacagccgcc
tttggtctgccgctgttgcacaacattgacccaacattgaaagcaccacaggtattggtg
ttagcaccgacccgtgagttggctattcaggttgcacaggcattgactgacttttcaaaa
catatgaacggcgttaacgtggtggccctgtatggcggccagcgttatgacgttcaatta
cgcgctttgcgccaggggccacaagttgttgtcggcaccccaggtcgtctgttagaccac
ctgaaacgcggtactcttaacctgtccaacctaagcggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtcgaaactatcatggcgcagatcccggct
gaacatcagaccgctctgttctctgccaccatgccagaagcgattcgtcgtatcacccgt
cgctttatgaaagagccacaggaagtacgcattcaatctagcgtgactacccgccctgac
attagccagagtttctggcgagttggtggtggttataacaagaaagaagcgttggttcgt
ttcctggaatctgaagatttcgatgcagccatcatcttcgtgcgcaccaaaaatgcgacg
ctggaagttgcagaagctctggaacgtagtggttacaacagcgctgcattgaacggcgac
atgaaccaggcgctgcgtgagcagacactggatcgcctgaaagatggccgtttggatatc
ctgatcgcgactgacgttgctgctcgtgggctggatgttgaacgtatcagcttggttgta
aactatgatatccctatggattcagagtcttatgttcaccgtatcggccgtactgggcgt
gcgggtcgtgcaggccgtgcattactgttcgtagagaaccgtgaacgtcgtctgttacag
aacgttgaacgtaccatgaagctgactatccctgaagttcagttgccaaacgcagaattg
ctgggcgagcgccgcttagctaaattcgcagcgaaagtgggccaacagctggaaagcagt
gatttggatatgtatcgtgcgttgctggcgaagctgcaaccagaagaagagtttgatctc
gaaactctggctgctgccctgctgaaaatggcacagggcgagcgtccgttgatcttgcca
ccggaagcaccgcgtcgtccacagcgtgaattcaattctcgtgatgaccgtggtagcgat
cgcggccgtgagcgtaatgacagccgtcgtgaacctcgttctgacaaccgtgacggtggc
gagcgtccagcacgtcgcgaacgtcgtgatgttggcgagatggaactgtaccgcattgaa
gtgggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggt
gatatcagcagccgttatatcggtaacatcaagctgtttgcttcgcattcaactatcgag
ctgccaaaaggcatgccgggtgaaatgttatctcacttcactcgtacccgtatcctgaac
aagccgctgaacatgcagctgttgggtgatgcacagccgcatgagcgtcgtgagcgccca
gcaggtggtaatggtggtgagcgtcgtggcggtgctggtcgttcagccggtggcgaacgt
cgtgaaggcgcaggtgctcctcctcgtcgttcattcggtagcgatcgtgctccagcgggt
ggtggcgaacaacgccgtggtaatcgcgatgctcagcgcccagctgctgcaccccgccgc
gatgatgccgcagcgccagccgcacccgctcgtcgtcgtttcggtgacgcataa
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