Yersinia kristensenii: HRD70_09830
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Entry
HRD70_09830 CDS
T08672
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
yki
Yersinia kristensenii
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yki03009
]
HRD70_09830 (srmB)
Enzymes [BR:
yki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRD70_09830 (srmB)
Ribosome biogenesis [BR:
yki03009
]
Prokaryotic type
rRNA helicases
HRD70_09830 (srmB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKJ15449
LinkDB
All DBs
Position
complement(2208968..2210293)
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AA seq
441 aa
AA seq
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MTVTTFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RKQTLLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADDIEHKTALLV
HLLKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVN
VLVATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLL
GRIGRYLKEPLKPRVIDELRPTSKAPSEKSTGKPSKKVLAKRKELKEAGKEKAKVKVRHR
DAKNVGKRRKPKDKPETKSAS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaactcgatctcgatgaacgcctcattgacgcactgcgc
gacaaaggctatgagcgcccgactgccattcaagctgcggctattccccccgctatggat
gggcgtgatgtattgggttcggcgcccacaggtacgggcaaaactgccgcctttttgctg
cccgccttgcagcatttgctggatttcccacgcaaaaaatctggcccaccacgaattcta
atcctgacgccaacccgtgaattagccatgcaggttgcggatcaagcccgtgaactggct
aagcatacccagctggatatcgcgacgattaccggtggtgtggcttatatgaatcacgcg
gaagtctttagtgaaaatcaggatattgtggtagcgacaactggccgcttgctgcaatac
atcaaagaagaaaactttgactgtcgggcagtagaaaccctgattctggacgaagctgac
cgtatgctcgatatgggcttcgcccaagatattgaaactatctcggcagaaacccgctgg
cgcaagcaaaccttactcttctcggccacattggaaggggaagctattcgtgagtttgca
gagcgtatcctgactgagccggtagaactggaagctgacccatcacgccgcgaacgtaaa
aaaattcagcaatggtattaccgcgctgacgatattgaacacaaaacggccttgctggtg
catttacttaagcaaccggaagtacagaaatccattattttcgtgcgtacccgtgaaaaa
gtgcaccaattggtcagttggttacgtgaagccggaattaacgcctggttccttgaaggc
gaaatggtacaggccaagcgcaccgaagccgttattcgtttaagtgatggccgggttaat
gttctggtggcgactgatattgcttcacgcggcttggatatcgacgatatcagccatgta
ttcaacttcgatctaccactaaccgctgacgtctatcttcaccgcattggtcgtactggc
cgtgcagggcgtaaaggtgtcgctatttcactggttgaagcgcatgaccacctattgcta
ggcagaattggccgttatctgaaagagccactgaagccacgtgtgattgatgaactgcgg
ccaaccagcaaagcaccgagcgaaaaaagcaccggaaaaccgtctaaaaaggttttagcg
aagcgtaaagagctaaaagaagccggtaaagagaaagcgaaagttaaagttcgtcatcgc
gacgctaaaaatgtgggtaagcgccgtaagccaaaagacaaaccagaaactaagagtgcg
agttaa
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