Yersinia kristensenii: HRD70_15210
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Entry
HRD70_15210 CDS
T08672
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yki
Yersinia kristensenii
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yki03019
]
HRD70_15210 (hrpA)
Enzymes [BR:
yki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HRD70_15210 (hrpA)
Messenger RNA biogenesis [BR:
yki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HRD70_15210 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
ResIII
AAA_25
NTPase_1
AAA_23
Ubiquitin_3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QKJ16412
LinkDB
All DBs
Position
3376300..3380187
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSSLAALSSQLGELMLRDQQRMRRRLQGARKVHNPEAVEAITREIEAEFATALQRVTRR
RAACPAITYPENLPVSQKKQDIYNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGV
IGHTQPRRLAARTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSHHFNNA
PIIEVSGRTYPVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESPGDILIFMSGEREIR
DTADALMKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGIPVNSVAADYRSVHTAILTGLLSHIGQKDVEKQEYTGARNARFAIFPGSGLFKKPP
KWSMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLF
GLPIVTERKINYGPIDPPLCRELFIRHGLVEGDWQTRHAFFRANLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRIGRDVISARHFDSWWKKTSQTQPELLNFEKTMLIKDGANKVNP
LDYPNFWYQGSLKLRLSYQFEPGTDADGVTVHIPLPILNQVKEEGFDWQIPGIRRELVVA
LIKSLPKPVRRNFVPAPNYAEAFLARATPLETSLLEALERELRRMTGVTVSRESWQWEQV
PDHLKMTFRVLDDKNRTLREGKDLAALKLQLQEKVQETLSAVADDGIEQNGLHIWSFGSL
PVCYEQRRGGYEVKAYPALVDEKDSVAIRLFDTESQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGKVMDLIDDCIACGVDKLVAQYGGPVWQEADFARLQEKVRAEL
NDTVVDIAKQVEQILTTAFSINKRLKGRVDISQALALSDIKAQLGGLIYRGFVTNNGWKR
LPDTLRYLHAIERRLEKLAVDPHRDRAQMLRIEHVQQMWQQWLNKLPPKRQQDDDVKEVR
WMIEELRVSLFAQQLGTSYPISDKRILQTIEQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcgcagcattatcctcccaactcggggagttgatgctccgtgaccaa
cagcgcatgcggcgtcggctacaaggcgcacgaaaagtccataatcccgaggccgtagag
gcgattacccgtgaaatagaggccgaatttgccacagcgctgcagcgggttacccgccgt
cgggcggcttgcccagccatcacttatcctgagaatttgccggtcagtcagaagaaacag
gatatttataatgcgatccgcgaccatcaggtggttattgtcgccggtgaaaccggttcc
ggtaaaaccacgcagttgccgaaaatctgcttggaattggggcgcggtgtcaaaggggtt
atcggccatactcagccgcgtcgccttgctgcccgtactgtggcgaaccgtattgccgat
gaactagacacctcccttggcggttgtgtcggttataaagtgcggtttaatgatcaagtg
ggtgaaaatacgctggttaagttaatgaccgacggtattttactggctgaaattcagcaa
gatcgcctgctgatgcaatatgacaccttgattattgatgaggcccatgaacgtagcctg
aacattgatttcatcttgggttatttgcgcgagttattgccaaaacgccctgatctaaaa
gtaattatcacctcggcgactattgatccgcagcgcttttcccatcatttcaataatgcg
cccattattgaggtctctggccgcacctatccggtggaagtgcgctatcggcctatagtg
gatgacgccgatgatgttgatcgcgatcagctacaggctatttttgatgccgtggatgaa
ctggggcgcgaaagccctggcgatattctgatctttatgagtggcgaacgggaaatccgt
gatactgcggatgcgctgatgaaacagaatttgccccatacggaggtgctgccgctgtat
gcgcgtttatcaaatagcgagcagaatagggtgtttcagtctcatcatgggcggcgtatt
gtgctggcgaccaacgtggccgaaacctcactgaccgtgcccggtattaagtatgttatt
gaccctggcaccgcgcgtatcagccgctacagtttccgcaccaaagtacagcgattgccg
attgagccggtttctcaagcctctgctaatcagcgtaaaggccgctgtggccgcgtgtca
gacggtatctgtattcgtctttattccgagcaggatttcctctcgcgccctgaattcacc
gatccggaaattctacgcaccaatttggcgtccgttatcctgcaaatgacctcattgggg
ctaggggatatcgcggctttcccctttgtggaagcgccggataaacgtaatattcaagat
ggcgtgcggctgctggaagagctgggggcgatccaaactgccagtaacgggcatcagcaa
ttaactccattaggccgtcaattggctcaattaccggtcgatccgcgcctggctcgcatg
gtactggaggcgcagaaaagcggcagtgtgcgcgaattgatgattatcacctcggcgttg
tctatccaagatccgcgtgagcgcccgatggataaacaacaggcctccgatgaaaaacac
cggcgttttgctgataaagattctgatttccttgcgtttgttaatctgtgggattatcta
aaagagcagcaaaaagagctgtcatcggcgcaattccgtaaattatgccgcagcgatttc
ctgaattatctgcgggtgcgtgaatggcaggatatctatactcaactgcgtcaggtcgtg
aaagagctggggatcccggtcaacagtgttgccgcggattatcgcagtgtccatacggct
attttgacggggttattatcacatatcggccagaaagacgttgaaaagcaagagtatacc
ggcgcacgtaatgcgcgttttgccatcttccccggttccggtttattcaaaaaaccgccc
aaatggagcatggtcgcggagttagtcgagaccagccggttatggggccgtattgctgct
cgcattgagcccgagtggattgaacctttagcgcaacatttggttaaacaccattatagc
gacccgcattgggagaaagcgcaaggggcggtgatggctagcgagaaagtgaccttattc
gggttgcctatcgtgactgagcgcaaaataaactatggccccattgacccgccactgtgc
cgcgagctgttcatccgtcacggtttggttgaaggggattggcaaacgcgccatgccttc
ttccgggctaatttaaagttactggctgaagttgaagaactggaacacaaatctcgccgc
cgcgacattttggttgatgatgagacactgtttaacttctatgatcaacgcattggtcgc
gatgttatttctgcgcgccattttgatagctggtggaagaaaaccagccagacacagccc
gagctgctcaactttgaaaaaaccatgcttatcaaggatggggcgaacaaagttaacccg
ctggattaccctaatttttggtatcaagggtcgctcaaattgcggctttcttatcaattt
gagccgggcactgacgccgatggggtcactgtccacatcccgctcccgatcctgaatcaa
gtgaaggaggaagggtttgattggcagattccggggattcgccgcgagctggtagtggcg
cttatcaagtcattacctaagccggttcgccgtaactttgtccctgcacctaattatgct
gaggcttttttggcccgagccaccccgttggaaaccagtttgttggaagcattagagcgc
gagttacgtcgcatgacgggtgtgacagtgtcacgtgaaagttggcagtgggagcaagtt
cccgaccatctgaaaatgacgtttcgcgtgctggatgataaaaatcggactctacgtgag
ggcaaagatcttgcggctttgaagctacaacttcaagagaaagtgcaagagaccctttct
gctgtagcggatgatggtattgagcaaaatggcttacatatctggagttttggctcactt
cctgtgtgctatgaacagcgccgcgggggatacgaagtcaaagcttatcccgcactggtg
gatgaaaaagacagtgttgcaatccgcttatttgatacggaatctcaacaacagcaagca
atgtggcaaggtacacggcggttattgctgctaaatattccttctcccattaagtattta
catgaaaaactgccgaacaaatctaaactcggcctttatttcaatacttatggcaaagtg
atggatctgattgatgattgcattgcttgtggggtggataaactggtggcgcaatatggc
ggcccggtttggcaagaggctgattttgctcgcttacaagaaaaagtgcgtgccgagtta
aatgatacagtcgtggatattgccaagcaagttgagcagatcctaaccacggcgtttagt
attaataagcgcctaaaaggccgagtcgatatttcgcaagcattggcgctttcagacatt
aaagcacagcttggcggcctgatttaccggggttttgtcactaataatggttggaaacgt
ttacccgatactttgcgctatttacacgcgattgagcgccgtttggagaagttagctgtc
gatcctcatcgtgatcgtgcccaaatgttgcgcatagaacatgtacagcaaatgtggcag
caatggctcaataagttaccgcctaagcgccaacaagatgacgatgttaaagaagtccgt
tggatgattgaagaactacgggtgagcttatttgcccagcaattaggcacatcatatccc
atttcagataaacgtattttgcaaactatcgaacaactctctgcttaa
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integrated database retrieval system
