Yersinia kristensenii: HRD70_19375
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Entry
HRD70_19375 CDS
T08672
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yki
Yersinia kristensenii
Pathway
yki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRD70_19375 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yki03019
]
HRD70_19375 (rhlE)
Enzymes [BR:
yki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRD70_19375 (rhlE)
Messenger RNA biogenesis [BR:
yki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRD70_19375 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKJ17157
LinkDB
All DBs
Position
complement(4262847..4264205)
Genome browser
AA seq
452 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAAGR
GDSRTSRPRSQADGQRRPAGPSSRGRSRKPGE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacaccgattcaacgtcaggcaatccctgtggtattggaaggccgtgat
ttaatggccagcgcgcaaaccggtacgggtaaaaccgcgggtttcaccttgccgttgttg
caactgctaagtcaggatcaacagccaattaaaggccgtcgtccggtgcgtgcgttgatt
ttgacgccaacccgcgaactggctgcgcagattgacgaaaacgtacagagttacagcaaa
tacctgaagctgcgttcgctggtggtatttggtggcgttagcattaacccacagatgatg
aaattgcgcggtggtgtggatattttggtcgccacccctggccgtttactggatctggaa
catcagaatgcagttgatttgtccaaaattgaaattttggtattggacgaagctgaccgc
atgttggatatgggctttattcacgatatccgtcgtgtgttggccaaactgccagccaaa
cgccagaacttgctgttctctgccactttctctgatgagattaaaggtttggccagtaag
ttgttgcataacccggcttctgttgaagttgcgcgccgtaacactgcgtctgaacaaatt
gcacaaagcgttcattttgttgataaaaaccgcaagcgtgagctgctgtctcagatgatt
ggtgaaggtaactggcagcaagtattggtgtttaaccgcaccaaacacggcgctaaccat
ttagccgagcaattgaataaagacggtattactgccgctgccattcacggcaacaagagc
caaggtgcgcgtacccgtgcattggctgattttaaagatggtaaaatccgtgtattggta
gcgactgatatcgctgctcgtggtttggatattgatcagttacctcatgtggttaactat
gagctgccaaacgtaccggaagattacgtgcaccgcattggccgtactggccgcgcggaa
cgtactggcgaggcgatttcactggtttgtgttgatgaacataaattgttgcgtgatatt
gagcgcttactgaaacgtgaaattccacgtatcgcactcgatggctatgagccggaccca
agtattaaagcggatccgattcaaaatggtcgtcagggccgtggggcgcagcgccctgga
atgggccgtggtagcagtgcgggtcgcccacagaatggtggtggtgcagcagcaggtcgc
ggtgatagccgtaccagccgcccgcgcagccaggctgatggtcaacgccgcccggcaggc
ccatcttcacgtggtcgtagccgcaaaccaggcgaataa
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