KEGG   Yersinia rochesterensis: CH54_1102
Entry
CH54_1102         CDS       T03609                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
ykr  Yersinia rochesterensis
Pathway
ykr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ykr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CH54_1102 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ykr03400]
    CH54_1102 (uvrB)
DNA repair and recombination proteins [BR:ykr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CH54_1102 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CH54_1102 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd Helicase_C UvrB ResIII UVR DEAD UB2H AAA_30 DUF87 SBDS_domain_II AAA_22
Other DBs
NCBI-ProteinID: AJJ37206
UniProt: A0ABM5SRZ3
LinkDB
Position
complement(1202229..1204241)
AA seq 670 aa
MSKLFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLSELQ
YSRNDQVFQRGTFRVRGEVIDIFPAESDEWAVRVELFDEEVERLSIFDPLTGQLQHEVPR
FTVYPKTHYVTPRERILQAMEDIKIELAERRQVLLANNKLVEEQRITQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITASMEKAIGETQRRRAKQQTYNEERGIIPQGLNKKVGDILQLG
QPSLRGKGKGRGGKVADTHDYQSLAPKALDQKIRELEVKMYTHAQNLEFEQAAELRDQVH
QLRQQFIAIS
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgagtaaattattcaaactacattctgagtttaagccagcgggtgatcagcctgaggcc
atccgtaaactggaggaggggttggaaaatggtctggcccatcagacgctgttgggggtg
acggggtcgggcaaaacctttacggttgccaatgttattgctgatttgaatcggcccact
atggtattagcgcccaacaaaaccttggcggcacagctttatggcgagatgaaagagttt
ttccccgataatgcggtggaatatttcgtctcctactatgactattatcagcccgaagcc
tatgtcccaagctctgatacctttattgagaaagatgcctcggtaaacgagcatattgag
caaatgcggctgtcagcgactaaagccctgctggagcgacgcgatgtggtggtggtggcc
tcggtctccgccatttatggtttgggtgatcccgacttatacctgaaaatgatgctgcat
ttaaccaagggcatgataattgatcagcgcgcaattttacggcgcttgtcagaattgcaa
tatagccgcaatgaccaagtgtttcagcgcggaactttccgggtgcgtggcgaggttatt
gacatcttcccagcggaatctgatgagtgggcggtgcgggttgaattatttgatgaagaa
gttgagcgactgtccatttttgatccgctcaccggccaactacagcatgaagttccccgt
tttactgtctatcctaaaacgcactacgttaccccgagggagcgtattttacaggcgatg
gaagacatcaaaattgagctagctgagcggcgtcaggtgttattagccaacaataaattg
gttgaagaacagcggattacacagcgaactcagtttgatctcgaaatgatgaatgaactg
ggctactgctccggcattgaaaactattcccgctatctttctggtcgtggcccgggtgaa
gcgccgccaaccctctttgattacctcccggcggatggtttgctgattgtggatgaatcc
cacgttaccatcccgcaaatcggcggcatgtacaaaggtgaccgttcgcggaaagaaacc
ttggtggaatatggcttccggctgccatcggcgctggataaccgcccaatgcgctttgaa
gagtttgaggcgctggcgccgcaaaccatttatgtctctgccactcccggcaaatacgaa
ctggagaaatccggtggcgatattattgaacaggtggtgcgcccaaccggcttgctcgat
ccattgattgaagtgcgcccggtggcaacacaagtggatgatttgctgtcagagatccgc
atccgcgcggcgattaatgagcgggtactggtgaccacgctgactaagcggatggccgaa
gacttaacggagtatctggtagaacatggtgcgcgggtgcgttacttgcattcggatatt
gacaccgttgagcgcgtagagattattcgcgatttgcgtctgggcgagtttgatgtgctg
gtggggatcaacttactgcgagaagggctggatatgccggaggtttctcttgtcgctatc
cttgatgctgataaagaggggttcctgcgctccgagcgctccttaatccagaccattggc
cgtgcagcacgtaacctcaatggtaaagcaattctttatggtgacagaattacggcctcg
atggaaaaagccattggtgaaacgcagcgccgccgggctaagcagcaaacttacaatgaa
gagcgcggcattattccacagggacttaacaagaaggtcggcgatattttgcaattgggc
caaccttcactgcgcggtaaagggaaagggcggggcggtaaagtggctgatacccacgat
taccaatctctggcaccgaaagcgcttgaccaaaaaatccgggagttggaagtgaaaatg
tacacacacgcgcaaaatctggagttcgaacaggcggcagaattacgcgatcaagtacac
cagttgcgccagcaattcatcgctatatcttaa

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