Yersinia rochesterensis: CH54_116
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Entry
CH54_116 CDS
T03609
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
CH54_116 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ykr03016
]
CH54_116 (trmU)
Enzymes [BR:
ykr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
CH54_116 (trmU)
Transfer RNA biogenesis [BR:
ykr03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
CH54_116 (trmU)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_C
tRNA_Me_trans_M
NAD_synthase
ThiI
Asn_synthase
QueC
DUF7411
ATP_bind_3
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
AJJ34945
LinkDB
All DBs
Position
complement(125819..126940)
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AA seq
373 aa
AA seq
DB search
MSDNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEYCSAATDLADAQ
AVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDL
GADYIATGHYVRRQDVEGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEVR
RIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVDGQHVGEHQGLMYHT
LGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQLHWVDREP
VTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQGEVCLGGGI
IEERYPLIGSAAN
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataacagccagaaaaaagtaatcgtcggtatgtccggcggtgtcgattcttcc
gtttccgcctacctgcttcagcagcagggctaccaagttgccggcttgttcatgaagaac
tgggaagaggatgatggcgaagaatattgctctgcagcgaccgacctggccgatgctcaa
gcagtatgcgacaaactgggcatggagttgcacaccgtcaattttgccgcagaatattgg
gataacgtgttcgaattgttccttgaggaatacaaagccgggcgtacccccaaccccgat
attctgtgtaataaagaaatcaaatttaaagccttcctggaattcgccgccgaagacttg
ggcgcggactatattgctaccggtcattatgtccgtcgtcaggatgttgagggtaaaagc
cgtttgctacgtggccttgatggcaataaagaccaaagctatttcctctacaccttaagt
cacgaacagcttgctcagagcctgttccccgttggggaattagaaaaacctgaagttcgc
cgcattgctgaacaacttgacctggtcaccgccaagaaaaaagactctaccggcatctgc
tttatcggtgagcgcaaattccgtgatttcctcggccgctacctgcccgctcaacccggc
ccaatcatgaccgtagatggccaacatgtgggtgaacatcagggtttgatgtatcacacg
ctgggccaacgcaaaggtttaggtattggcggtaccaaagaaggtggcgatgacccatgg
tatgttgtggataaagatgttgccaataacatcctgttggtagcacaggggcacgaacat
ccgcgtttaatgtctgtcggtctgattgctcaacagttgcattgggtggatagagaaccg
gtcaccgccgctttccgctgtgtggtgaaaacccgttatcgtcaacaggacattccttgc
accgttacacctttggatgacgagcgtgttgaggttcggtttgatgaacccgtggcggca
gtaacacccggtcagtcggctgttttctatcaaggcgaagtttgcctcggtggcggtatt
attgaagagcgttacccgctgattggttcagccgcaaactaa
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