Yersinia rochesterensis: CH54_1974
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Entry
CH54_1974 CDS
T03609
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH54_1974 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ykr03019
]
CH54_1974 (pnp)
03016 Transfer RNA biogenesis [BR:
ykr03016
]
CH54_1974 (pnp)
Enzymes [BR:
ykr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CH54_1974 (pnp)
Messenger RNA biogenesis [BR:
ykr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CH54_1974 (pnp)
Transfer RNA biogenesis [BR:
ykr03016
]
Prokaryotic type
tRNA degradation factors
CH54_1974 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
KH_2
S1_2
S1_RRP5
UPF0181
KH_KhpA-B
Spt6_S1
aRib
Motif
Other DBs
NCBI-ProteinID:
AJJ36749
UniProt:
A0A386HAS8
LinkDB
All DBs
Position
complement(2169212..2171332)
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AA seq
706 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV
NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTAAAVLMVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE
ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSV
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE
FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIYTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIGDDGTIKIAAT
DSEKAQHAIRRIGEITAEIEVGRIYNGSVTRIVDFGAFVAIGGGKEGLVHISQIADKRVD
KVTDHLQMGQEVPVKVIEVDRQGRIRLSIKEALETATPAVETPAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgtaaattccagtacggccaacataccgtcaccatcgaaact
ggcatgatggctcgtcaggcaactgctgctgtaatggtaagcatggatgacacagcagta
ttcgtcactgttgttggccaaaagaaagccaaaccaggccagagcttcttccctctgaca
gttaactatcaggagcgtacttacgctgctggtcgtatcccaggcagcttcttccgtcgt
gaaggccgcccaagtgaaggcgaaacactgacttcacgtctgattgaccgtccgattcgc
ccactgttcccagacagcttcctgaatgaagttcaggttattgcgactgttgtttcggtt
aacccacaaattaacccagatatcgtggcattgattggtgcatcagctgcgctaagcctg
tcaggtattccattcaacggcccaatcggtgctgcgcgcgttggctttatcaacgaccag
tacgtgctgaacccaaccactgacgagctgaaagaaagccgtctggacttggttgttgcc
ggtactgctgctgcagtattgatggttgaatcagaagctcaaattctgtctgaagatcaa
atgttaggcgcggttgtcttcggtcacgaacaacaacaagttgtgattgaaaatatcaac
gctctagttgctgaagcgggcaaaccgaagtgggattggcatgcagaaccagtgaatgaa
gcgctgcacgcgcgtgttgctgagttggctgctgctcgtctgggtgacgcataccgtatc
accgagaaacaagagcgttacacacaagttgatgctatcaaagctgacgtgactgaagcg
ctgttagcgcaagacgatactttagatgctgctgaaattcaggatatcctgggcagtgtt
gagaaaaacgtcgtgcgtagccgtgtattagctggcgagccgcgtattgatggccgcgaa
aaagatatgatccgtggtctggatgtgcgtaccggcgtattgccacgtactcatggttct
gcgttgttcacccgtggcgaaactcaggcactggttactgcaacattgggtactgcacgt
gatgcacaaaatattgatgagctgatgggtgagcgtactgactcattcctgctacactat
aatttccctccatattgtgttggtgaaaccggtatggttggctcaccgaaacgtcgtgag
attggccatggccgtctggcaaaacgtggtgtgttggcagtaatgccaagcccgagtgaa
ttcccttacacgattcgtgtggtttctgaaatcaccgagtctaacggttcttcctcaatg
gcttctgtttgtggtgcttctctggccttgatggatgcaggtgtgccgattaaagccgct
gttgccggtatcgcaatgggcttggttaaagaagacgaaaactttgtggtgctgtctgac
attctgggtgacgaagatcacttgggcgacatggactttaaagtagccggtagccgtgac
ggtatcaccgcattgcaaatggatattaaaatcgaaggtatcacccgcgaaatcatgcag
gtggctctgaaccaagctaagggtgcgcgtctgcacattctgggtgttatggaacaggct
atcagcacaccgcgtggcgatatctctgagttcgcgccacgcatctacaccataaaaatc
aatcctgagaaaatcaaggatgtgatcggtaaaggtggttcagtgatccgtgcgttgact
gatgaaaccggtactaccattgagatcggcgatgatggcaccattaagattgcggcaacc
gacagcgaaaaagcacagcatgctatccgccgtatcggagagattactgccgaaatcgaa
gtaggtcgtatctataatggtagtgtgacccgtattgttgacttcggtgcatttgtggcc
attggtggcggtaaagaaggtctggttcacatttctcaaatcgctgacaagcgtgttgat
aaagtgactgaccatctgcaaatgggccaggaagttccagtgaaagtaatagaagttgat
cgtcagggacgtattcgcctgagtatcaaagaagctttagaaactgccactcctgctgta
gaaactccggcagctgagtaa
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