Yersinia rochesterensis: CH54_2031
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Entry
CH54_2031 CDS
T03609
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH54_2031 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ykr03019
]
CH54_2031 (rnr)
03016 Transfer RNA biogenesis [BR:
ykr03016
]
CH54_2031 (rnr)
Enzymes [BR:
ykr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH54_2031 (rnr)
Messenger RNA biogenesis [BR:
ykr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH54_2031 (rnr)
Transfer RNA biogenesis [BR:
ykr03016
]
Prokaryotic type
tRNA degradation factors
CH54_2031 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
RNase_II_C_S1
HTH_20
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AJJ34679
UniProt:
A0A386HAW3
LinkDB
All DBs
Position
complement(2224704..2227250)
Genome browser
AA seq
848 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDLYLSAEQMKTAIH
GDVVLAQPVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDGRLSFDILIPP
DAICGARMGYMVVVELTQRPTRRSKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLLELHTMYKALDQA
RAERGGIAFETEEAKFIFNAERRIERIESTVRNDAHKLIEECMILANIAAARFVEKHNEP
ALFRVHDRPSDDHISALRSVLGELGLTLGGGLKPEPKDYAVLMDEVADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNVKERWTPT
GGWHSEYDEMLQLGEHCSMTERRADEATRNVADWLKCDFMQDQVGKVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGMTYRLGDTVEIRVEAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKKADGQRTLRDTSTGRGGRGASSGAPRRDSAPAGSGQ
KRPRRAKKPANFEPDSAFRPVDAAAKLDEKALAEKKAKAKAKRASAKTKKIAAATKAKRA
KKKTSSDQ
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcttggaacgagaagcagagaaatatgagtcaccgatccctagc
cgggaattcattttggctcatctcgccaagcgcgaaacacccgccagccgtgaagagctg
gccaatgaacttaatttatctggtgaagaacagctagaggcgctgcgtcgccgcctgcgc
gcaatggagcgtgatgggcaattggtcttcacccgccgtcagtgctatgccttacctgag
cgtctggacttattgcgcgggacagttattggccaccgtgatggtttcggctttttgcgt
gttgaaggcagtaaagacgatctgtatctctccgcagaacagatgaaaaccgcgattcat
ggtgatgtggtcttggcccagccggttggcgctgaccgcaaaggccgccgtgaagcacgt
atcgtgcgcgtattagtcccgaaaaccagccagattgtcggccgttactttactgatgcc
ggtaccggttttgtggtgccggatgatggccgcttgagttttgatatcctgattccacct
gatgctatctgcggtgcgcggatgggctatatggtcgtggtcgagttaactcagcgcccg
actcgccgttctaaagcggtgggtaagattgttgaagtgctcggcgagaatatgggtacc
agcatggcggtagatatcgcgctgcgcacccatgaaatcccgcatacctggccgccacaa
gttgaaaagcaagttgcggatctgaaagagcaagtgccggaagaagcgaaaaaagggcgg
gtggatttacgcaacctacctttggtcactattgatggtgaagatgcccgtgacttcgat
gatgcggtgtattgtgagaaaaaacgcggtggtggctggcgcttgtgggtggcgattgct
gatgtcagctattatgtacgcccgcgcactgcgctggatgatgaagctcgcagccgtggt
aactcggtttacttcccgtcacaagttgttccgatgctaccggaagtgctgtccaacggc
ctttgctccctgaatccacaggtagaccgcctgtgcatggtgtgtgagatgaccatctcc
gcccagggtaagttatcgtcgtataagttctacgaagcagtgatgagctcccacgcgcgt
ctgacctacaccaaagtgtggcggattattgatggtgaagagtcgctgcgtgaacaatat
aagccgctggtgccgcatttgttagagctgcacaccatgtacaaagcgctggatcaggcc
cgtgctgaacgcggcggtattgcctttgaaaccgaagaagccaagtttatcttcaatgcc
gaacggcgcattgagcggattgaatcgacggtgcgtaatgacgcgcataagttgattgaa
gagtgcatgattctggcgaacattgctgcggcacgttttgtggaaaaacacaacgagccg
gcgctgttccgggtgcatgaccgtccaagtgatgaccatatctccgcactgcgtagcgtg
ctgggtgagctgggcctgactcttggtggcggtttaaaaccagagccaaaagattatgcg
gtgctgatggatgaagtggcggatcgtccggatcatgaaatgctgcaaaccatgttgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccggggtcactttggcttggcatta
gcgtcttatgggcattttacctcgccaattcgccgttatcctgatttagccatgcatcgg
gctatcaaataccagctcgctaaagagcacggcaatgtgaaagagcgctggacacccacc
ggtggctggcacagtgaatatgacgagatgctgcaattgggcgaacattgctcaatgact
gaacgccgcgctgatgaagctacccgtaatgtggcggattggctgaagtgtgattttatg
caggatcaggtcggtaaagtcttcaccgggatcattgccagtgtcaccggctttggtttc
ttcgtgcgcctcgatgacttgtttattgatggtctggtgcatgtttccagcttggataat
gattactatcgctacgacaacatcggccagcgcttgatcggcgagtcttccggtatgacc
tatcggctgggcgacaccgtagaaattcgcgttgaagcggtacatatggatgagcgcaaa
attgactttgcactggtctccagtacccgtaaaccgcgcggcgaaggcaaaacggcgcgt
gataaagccaaaaaagctgatggtcagcgcactctgcgcgatacctccacggggcgtggt
ggacgcggcgcttcatctggagcaccgcgccgtgatagtgcaccggcaggaagtgggcag
aaacgccctcgtcgtgctaaaaaaccggcaaactttgagccggatagtgctttccgtccg
gtagatgctgccgctaagttagatgaaaaagcattggccgagaaaaaagccaaagcgaaa
gcgaaaagagcatcagctaagactaagaaaattgccgctgccactaaggccaagcgcgcg
aagaaaaaaaccagcagcgaccaataa
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