Yersinia rochesterensis: CH54_2852
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Entry
CH54_2852 CDS
T03609
Symbol
fadB
Name
(GenBank) fatty oxidation complex, alpha subunit FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr00071
Fatty acid degradation
ykr00280
Valine, leucine and isoleucine degradation
ykr00310
Lysine degradation
ykr00362
Benzoate degradation
ykr00380
Tryptophan metabolism
ykr00410
beta-Alanine metabolism
ykr00640
Propanoate metabolism
ykr00650
Butanoate metabolism
ykr00907
Pinene, camphor and geraniol degradation
ykr00930
Caprolactam degradation
ykr01100
Metabolic pathways
ykr01110
Biosynthesis of secondary metabolites
ykr01120
Microbial metabolism in diverse environments
ykr01200
Carbon metabolism
ykr01212
Fatty acid metabolism
Module
ykr_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
CH54_2852 (fadB)
00650 Butanoate metabolism
CH54_2852 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
CH54_2852 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
CH54_2852 (fadB)
00310 Lysine degradation
CH54_2852 (fadB)
00380 Tryptophan metabolism
CH54_2852 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
CH54_2852 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
CH54_2852 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
CH54_2852 (fadB)
00930 Caprolactam degradation
CH54_2852 (fadB)
Enzymes [BR:
ykr01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
CH54_2852 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
CH54_2852 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
CH54_2852 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
CH54_2852 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
AJJ35328
LinkDB
All DBs
Position
complement(3092179..3094368)
Genome browser
AA seq
729 aa
AA seq
DB search
MLYQSETLKLHWLENGIAELVFEAPGSVNKLDTKTVANLGEALIVLEKQSELKGLLLSST
KAAFIVGADITEFLSLFNAPPEKLHQWLVFANDIFNRLEDLPVPTLSAINGYALGGGCEC
ILATDFRVASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDIIAKDALK
VGLIDAVVAPEKLADAALTMLKQAIDGKLDWKAARLPKLEPLKLNPTEAAMCFTIAKGMV
MQVAGKHYPAPLTAVKTIEAAAKLGRTEALKLETTSFVRLAGSNEARALVGIFLNDQYVK
GQAKKLSKGVSAPKQAAVLGAGIMGGGIAYQSALKAVPVIMKDINEKSLTLGMNEAAKLL
NKQLERGKVDGLKMASILATIQPTLDYTGIERAQVIVEAVVENPKVKAAVLAEVEALIGE
ETVLASNTSTIPIDQLAKSLKRPENFCGMHFFNPVHRMPLVEIIRGAKTSDKTIAAVVAY
ATQMGKTPIVVNDCPGFFVNRVLFPYLAGFGMLVRDGADFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPERMNKDYRDAVDVMFENQRFGQKNGQGFYRYTQDAKGKP
RKENDEQVDVLLAQVIQSVKKFSDEDIIARTMIPMINEVVRCLEEGIIASPAEGDMALVY
GIGFPPFHGGVFRYLDTIGSANYVEMAQRYVHLGALYHVPAGLRAKAEHNESYYPVATAL
PDISTSQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaagcgaaacattaaagcttcactggctggaaaacggcattgccgagttg
gtgtttgaagcaccgggttcagttaataaactggatactaaaaccgtagccaatctgggt
gaagccttgattgtgttggaaaaacaaagcgaactcaaagggttactattgagttcaact
aaggcggcctttattgttggcgctgatatcacagagtttctatccctgtttaatgcccca
ccggaaaaattgcatcaatggttggttttcgccaacgacattttcaatcgtttggaagat
ttaccggtaccgaccctatctgcgatcaatggatatgcgctgggtggcgggtgcgaatgt
attctggcaacagatttccgtgtggcttcaccagaagcacgtattggcctaccggaaacc
aagctcggaatcatgccaggttttggcggttcagttcgcttgccacggttattaggcgct
gacagtgcgttggaaattatcgcggctggcaaagatattattgctaaagatgctttaaaa
gttggtctgattgatgctgtcgtcgcccctgagaaactggctgatgcagctttaaccatg
ctgaaacaggctattgacggcaaacttgactggaaagccgctcgcctcccgaaattggag
cctctgaagctcaaccccactgaagccgccatgtgttttaccattgctaaaggcatggtc
atgcaagtagcaggtaaacactatccggctcccctgaccgcagtcaaaaccatcgaggcc
gccgcaaaacttggtcgaaccgaagcattgaagttggaaaccaccagttttgtccgttta
gcgggatccaatgaagcccgggcattagtcggtattttcctcaatgatcaatatgttaaa
ggacaggctaaaaaactgtccaaaggtgttagtgcaccaaaacaggccgcagtactgggt
gcggggattatgggcggtggaattgcctatcaatcagcactgaaagctgtgccagtcatt
atgaaagacattaatgaaaaatccctgacactggggatgaatgaggcggccaagttactg
aataaacagttggaacgcggcaaagtggatggtctgaaaatggcgagtatcttagcgact
atccagccaacacttgattacaccggtattgaacgcgcccaagtcatcgtagaagcggtg
gtggaaaatccaaaagtgaaagcggcggtgctggctgaagttgaagcattgatcggcgaa
gaaactgttttggcctctaacacctctacaattccgatcgatcaactcgctaaatccctt
aaacgcccagaaaacttctgtggcatgcacttcttcaaccccgttcatcgcatgccactg
gttgaaattattcgaggtgcgaaaacctcagataaaactatcgctgctgttgtcgcatac
gccacgcaaatgggtaaaaccccgattgtggtcaatgattgcccaggtttctttgttaac
cgcgttttattcccgtatctggccgggttcggtatgttagtcagagacggagcggacttc
cgccaaattgataaagtgatggaaaaacaatttggctggccaatgggccctgcctatcta
ttagatgtggtcggcattgataccgcgcaccatgcacaagctgttatggctgccggcttc
cctgaacgtatgaataaagattatcgcgatgcggttgacgtcatgttcgaaaaccaacga
tttggtcaaaaaaatggccagggtttctaccgttacacccaagatgccaaaggcaaaccg
cgtaaagagaatgatgaacaagtagatgtgttattagcacaagtcattcaatcagttaag
aaatttagtgatgaagatattattgcccgcaccatgatcccgatgatcaatgaagtcgtg
cggtgtctggaagaaggtattattgccagcccagctgagggcgacatggcgctggtgtat
ggcattgggttcccgccattccacggcggcgttttccgttaccttgacaccatcggcagt
gcaaattatgtcgaaatggctcagcgttatgttcatcttggtgcgctgtatcacgtcccg
gcggggctgagggccaaagctgaacataacgaaagctattatcctgtagcgacagcgctg
cctgatatttctaccagtcaaccggcatga
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