Yersinia rochesterensis: CH54_2881
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Entry
CH54_2881 CDS
T03609
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH54_2881 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ykr03021
]
CH54_2881 (rpoC)
03400 DNA repair and recombination proteins [BR:
ykr03400
]
CH54_2881 (rpoC)
Enzymes [BR:
ykr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CH54_2881 (rpoC)
Transcription machinery [BR:
ykr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CH54_2881 (rpoC)
DNA repair and recombination proteins [BR:
ykr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CH54_2881 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJJ37040
LinkDB
All DBs
Position
3118884..3123104
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPDAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQSEAPV
VPQVSADEATANLAELLNAGFGNNKG
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcgttcggcgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatcgttg
ccatctcgcatcggtttactgctggatatgccattacgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacttggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaagctattcaggccctattgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgttggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtgttgccgccagacctgcgtccattggtgccgttggatggtggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggctgctcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgtggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactctggtcgttcggtaatcaccgtgggtccatac
ctgcgcctgcatcagtgcggtctgccaaagaaaatggctcttgagctgttcaagccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccattaaagctgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagttgcatccactggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattaggtctgtattacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggtactgactggtccgaaagaagctgagcgtatttatcgcgctggt
ctggcatctctgcatgcccgcgtaaaagtgcgtattactgaagaaattcgtaataccgaa
ggcgaaagcattacgcgtactagcatcattgatacgacagtaggccgtgctattttgtgg
atgatcgttccacaaggtctgccttactctatcgtgaaccagccgctgggcaaaaaagct
atctccaagatgctaaacacgtgttaccgcatcctgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagatgcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgaaatccaggagcagttccaatccggtctggtaacggcaggcgaacgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgccaaggcgatgatggataac
ttgtctgttgaagatgttgtcaaccgtgacggcgttgtcgagcagcaagtatccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gcagggatgcgtggcctgatggctaagccagatggttcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtcgtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgttctg
ggtcgtgtgactgcagaagaagttatcaaaccgggtacggctgatattcttgttccgcgt
aacaccctgctggacgagaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgtaaccaatgcagcgggcaagctggttattacttctcgtaatact
gagctgaagctgatcgacgaattcggccgtactaaagaaagctacaaagtgccttacggt
gcggtaatggctaaaggcgatggcgcagaagtccagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtcaccgaagtgagcggtttcatccgcttcgccgacatg
gttgacggccagaccattacacgccagaccgacgaactgactggtttgtcttctctggta
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgattccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagttggaagacggtattcagattggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatttcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgacggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcacgcagttactcgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagataaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaatcgaggct
acgttcacccgtgacctgctgggtatcaccaaggcatccttggctaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgcggcctgaaagaaaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcacagagtgaagcaccagtg
gttccgcaagtcagcgcggatgaagcgactgctaacctggctgaattgctcaacgccggt
tttggtaacaacaaaggctaa
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integrated database retrieval system
