Yersinia rochesterensis: CH54_2939
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Entry
CH54_2939 CDS
T03609
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH54_2939 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ykr03400
]
CH54_2939 (uvrA)
DNA repair and recombination proteins [BR:
ykr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH54_2939 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH54_2939 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_25
DnaJ_CXXCXGXG
RsgA_GTPase
nSTAND3
NACHT
AAA_23
Viral_helicase1
cobW
T2SSE
ScfRs
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AJJ36214
LinkDB
All DBs
Position
complement(3193629..3196460)
Genome browser
AA seq
943 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKGEHTKTLENLAMQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALELSGGTAVVADMDDP
HAEELLFSANFACPICGYSMSELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLADHYKFDIEAPFNSLDAATQKAVLYGSGKDTIEFKY
INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCTSCNGTRLRREARY
VFVEKTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTVDDIMAAPKSLTGQFLSGKREIAI
PAQRVAGDPSKVLKLIGASGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLYSIAQR
QLNGATSNEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRARGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEVKY
KGKSIHEVLAMTIEEAREFFDAVPALARKLQTLMDVGLSYICLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRK
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataatatcgaagttcggggcgctcgcacccataatcttaagaatatcaacctgatt
atcccgcgcgacaaactgatcgtggtcaccggtctatcgggttcaggcaaatcctcactg
gcttttgacaccctgtatgccgaggggcaacgccgctatgttgagtctctctccgcctat
gcgcgccaatttctgtcgctgatggaaaaaccggatgtcgaccatattgaaggtctctct
ccggccatctccatcgagcaaaaatcaacctcccataacccgcgctccaccgtgggaact
atcactgaaatccatgattacctgcgtttgctgtttgcccgtgtcggcgagccgcgctgc
ccggatcatgatgtcccgctggcggcccaaacggtcagccagatggtggataacgtcatc
agtcagcccgagggccgccgcctgatgttactggcgccagtggtaaaagatcgcaaaggc
gaacataccaaaacgctggaaaatctggctatgcagggctatatccgggcgcggatcgat
ggcgaagtttgcgatctgtctgatccaccgaaattagagctgcaaaagaaacacaccatt
gaagtggtggtcgatcgctttaaagtacgcgaagatctggcacagcgcctggccgaatca
tttgaaacagcattggagctttccggcggtactgccgtggtcgccgatatggacgatcca
cacgccgaagagttgttattctccgccaactttgcttgcccaatttgcggctatagcatg
agtgagctggaaccacgcctgttttcctttaacaacccagccggtgcttgcccgacctgt
gatggtctgggcgtgcaacaattctttgacccagaccgtgtgctgcaaaacccggagctg
tcactggcgggtggcgcaattcgtggctgggatcgccgcaacttctattacttccagatg
ctacgttcattggcggatcattataagtttgatatcgaagcgccatttaactcgctagat
gccgcaacacagaaagctgtgttatacggttctggcaaagatactattgaattcaaatac
ataaatgaccgcggtgataccaccgtgcgccgccatcctttcgagggggtgctgcacaat
atggaacgccgttataaagagaccgaatctagtgcggtgcgcgaagagctggctaaattt
atcagcaaccgctcttgtacctcatgcaacggcacccgcctgcgccgcgaagcgcgttat
gtctttgttgaaaaaactacattgccggaaatctcggaactgagtatcggccatgcgctg
agtttcttccagaacatgaaactgagcggccagcgggcgcaaattgccgagaaaatactg
aaagaaattggcgaccggctaaaattcctggtgaacgtcgggctaaattatctgtcactg
tcccgctcggcggaaaccctctccggtggcgaagcgcagcgtatccgcctggccagccag
attggggccggtttggttggcgtcatgtatgtgctcgatgagccgtccatcggcttgcat
cagcgcgataatgaacgtttgctggaaacattgattcacctgcgaaatctgggtaatacc
gtgattgtggtggagcatgatgaagatgctattcgggccgccgaccatgtgattgatatc
ggcccaggtgccggagtgcatggcggtgaagtggtcgcagaagggacggttgatgacatt
atggccgctcctaagtcactcaccggccagttcctcagcggcaagagggaaattgccatc
ccagcccaacgggtcgcgggtgacccaagcaaagtattgaagttaattggtgccagcggc
aataacctgaaagatgtgacgctaacactgccggtcgggctatttagctgcattaccggg
gtttctggctcgggtaagtccactcttatcaatgatactttatatagtattgcgcagcgc
cagttgaacggggcgaccagtaatgagccggctccgtatcgtgatatccaagggctagag
catttcgataaagttatcgatattgaccaaagcccgattggccggactccgcgctctaac
ccggcaacttataccggcatatttacccccattcgcgagctatttgcgggcgtacctgag
tcacgcgctcgaggttatactccgggccgctttagctttaacgtgaaaggcggccgttgc
gaagcctgtcagggtgacggggtgattaaagttgaaatgcacttcctgccagacatttat
gtcccttgcgatcaatgtaaaggtaagcgctataaccgcgaaacactggaagtgaaatac
aaaggcaaaagtattcacgaagtgttggcgatgactatcgaagaggcgcgcgagttcttt
gatgcggtgccagcattggcgcgtaagctgcaaaccttgatggatgtgggcctgtcatat
atttgtctcggccagtcagcgaccaccttatcgggcggggaagcgcagcgagtcaaatta
tctcgcgaactgtcaaaacgcggcaccggccagacactctatattctggatgaaccgacc
accggcctgcactttgctgatattcagcagctattggcggtgttgcatcagctgcgcgat
caaggcaataccattgtggtcattgagcataatctggatgtgattaagaccgcagactgg
attgtcgatttggggccagagggcggcagtggcggcggcgagattttagtttccggcaca
ccagagacggtcgcagaatgcgcggcatcacacacggcccgattcctcaaaccgatgttg
caacgtaaataa
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