Yersinia rochesterensis: CH54_3535
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Entry
CH54_3535 CDS
T03609
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03030
DNA replication
ykr03430
Mismatch repair
ykr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH54_3535 (dnaE)
03430 Mismatch repair
CH54_3535 (dnaE)
03440 Homologous recombination
CH54_3535 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ykr03032
]
CH54_3535 (dnaE)
03400 DNA repair and recombination proteins [BR:
ykr03400
]
CH54_3535 (dnaE)
Enzymes [BR:
ykr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CH54_3535 (dnaE)
DNA replication proteins [BR:
ykr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CH54_3535 (dnaE)
DNA repair and recombination proteins [BR:
ykr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CH54_3535 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AJJ34625
LinkDB
All DBs
Position
3852350..3855865
Genome browser
AA seq
1171 aa
AA seq
DB search
MIQSTNFWYLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHGAGVKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFILRGNQAQVDLCLEFYQEHFPDSYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFINESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDMSTE
DFLVEKSKQGLEERLEFLFPDPEVRVQKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGM
TLEKAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASI
PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPEEMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEN
EIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFD
RLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIV
LDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIASRVMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgattcaatccactaatttctggtatctggatatggccgaacctcgttttgtccacctg
cgtgttcacagcgattactccatgatcgatggattagccaagattggacccttggtgaag
agagctgctgccctaggcatgcccgctctggccattaccgactttaccaacctatgtggc
ttggtaaaattctacggtagcgctcatggtgctggggttaaacccatcatcggcgcagac
ttctacgtgcaaagtgaaattctaggtgatgaattagctcacctcactgttctggcacgt
aataatgaaggttatcaaaaccttaccttgcttatctctgaagcttatcaacgcggatat
ggtgccgctggccctatcattgaccgtgattggctgattaagcacaaagaaggcctgatt
ctgctgtctggtggccggatgggggatgttggcaagttcattctgcggggtaatcaggct
caggttgatttgtgccttgaattttatcaagagcatttccctgacagctactatctggag
ttaattcggactggccgcccggatgaagaaaactatctgcatgccgctgtagcattagca
accgagcgtggcttgccggtagtcgcgactaatgatgtgcgttttatcaatgaatctgac
tttgacgcccatgagatccgcgtggctatccatgacggctttacattggttgaccctaag
cggcctaagaattatagccctcagcaatttatgcgcgatgaagagcaaatgtgtgagctt
ttcgcggatattcctgaggcgctgattaacagtgttgaaatagccaaacgttgtaatgtg
actatccggcttggtgagtatttcctaccgcaattccccaccggcgatatgagcacagaa
gactttctggttgaaaagtctaaacagggtttagaggagcggctggaattcctattccca
gatcctgaagttagggtacaaaaacgccctgaatatgatgaacgtctggaaattgaacta
aaagtcattaaccagatgggttttcctggttacttcttgattgtaatggagtttatccag
tggtcaaaagataacggcgtgccggtagggccggggcgtggttctggtgcgggttctttg
gtggcttatgcgctgaagattactgaccttgatccgctggaatttgacctgctgttcgaa
cgttttctaaaccccgaacgtgtatcaatgcccgacttcgacgttgacttctgcatggaa
aaacgcgatctggtcattgagcatgtggctgaaatgtatggccgtgatgctgtttctcag
ataattacctttggtaccatggcagccaaagcggtcattcgcgatgtgggccgagtcttg
ggccatccttatggcttcgttgaccgaatctcaaagttagtcccgcctgatccgggcatg
acgctagagaaagcattcgctgcggaaccgcaactgcctgaaatctatgaggcagatgaa
gaggttagagcgctaattgatatggcgcgcaagttggaaggggtaacgcgtaacgccggt
aaacatgccggtggggtagttattgcaccaacaaaaattaccgattttgccccgctatac
tgcgatgcagaaggcaataacccggttacgcaattcgataagaatgatgtggaatatgcc
gggttggtaaagttcgacttcctaggtttgcgaacacttactatcattaactgggcattg
gagatgatcaatgcccggcgtgcgaaaaccgggttagagccgattgatattgcctctatt
ccactggatgataaaaaaagcttcgatatgctgcaacgttctgaaacgacggcggtattc
cagcttgaatccagaggcatgaaagatcttatcaagcgcctaaaacctgactgcttcgaa
gatatgatcgcgttggtggcattattccgccccggcccattgcaatcagggatggttgat
aacttcattgaccgtaaacacggccgtgaagcaatatcctatcctgatattgaatggcag
catgaatcactaaaaccagttcttgagccaacctatggcatcattttatatcaagaacag
gttatgcagattgctcaggttctgtctggttattcactcggcggcgcggatatgttgcgg
cgtgcgatgggtaagaagaacccagaggagatggcgaaacagcgctctatatttgaagat
ggtgcgaaaagccagggggtcgagggtgaactggcgattaagatttttgacctggtagag
aaatttgctggttacggttttaacaagtcacactccgccgcctatgctttggtttcttac
caaactttgtggttgaaagcccattatcctgcggagtttatggcggcggtaatgaccgcc
gatatggacaacaccgataaggtggtgggcctggtcgatgagtgctggcgcatggggctg
aaaattctgccacctgatatcaatagcggcctgtatcatttccatgtcaatgatgaaaat
gaaattgtttatggtatcggcgcaattaaaggtgtcggcgaggggccgattgaggcgatg
ctggaggcccgcaaagaaggcggctacttcaaagagctgtttgatttatgtgccagagtt
gatactaaaaaacttaatcgccggattttagaaaaacttattatgtccggtgcctttgac
cgtttggggccgcaccgcgctgcattaatgagttcgctgggtgaagcattaaaagccgca
gaccaacatgctaaggcagaagccattggtcaggttgatatgtttggtgtattagcagat
gctcctgagcaggttgagcaatcttatgctaatgtgccgccgtggcaggaacagattgtt
ttagacggtgagcgggaaacgttggggctgtacctgaccggccacccaatcacccaatat
cttaaggaaatagagcgttatgccggcgggctgcgtttgaaagatatgcacccgacggat
cggggcaaaatgactatggctgcggggttggttatcgcttctagggttatggtgacaaaa
cgcggaaatcgtattggcatttgtacattggacgaccgttctgggcgtcttgaagtcatg
ctattcaccgatgcgttggaaaaatatcagcatttgttggaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtggacttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcccgtgggcttgctatatcgctgacc
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtgcatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattgatagatttgcgaacgttg
gtaggtaatgagcaggtggaactggaatttgactaa
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