Yersinia rochesterensis: CH54_3992
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Entry
CH54_3992 CDS
T03609
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K19789
DNA repair protein RadD
Organism
ykr
Yersinia rochesterensis
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ykr03400
]
CH54_3992
DNA repair and recombination proteins [BR:
ykr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
CH54_3992
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
DUF7577
SWI2_SNF2
Zn_ribbon_3
zf-tcix
AAA_30
AAA_16
Zn_Ribbon_1
AAA_22
SLFN-g3_helicase
DZR
AAA
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AJJ36969
LinkDB
All DBs
Position
complement(4334348..4336120)
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AA seq
590 aa
AA seq
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MAFTLRPYQQEAVDATLAYFRRHTEPALIVLPTGAGKSLVIAELAKLARGRVLVLAHVKE
LVAQNHAKYCAYGLEADGLEADIFAAGLQQRQSEGKVVFGSVQSVARNLSLFDSAFSLLI
IDECHRISDADDSQYQQIIQHLRTTNPRLRLLGLTATPYRLGKGWIYQFHYHGITRGDGK
SLFRDCIYELPLRYMIKHGFLVPPERLDMPVVQYDFSRLTSNSDGMFREADLDRELKQQQ
RITPHIVSQIVEYAAHRRGVMIFAATVEHAKEVYGLLPKGQAALVSAGTPPAERDALITA
FKQQKLHYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSPGKEDCLILD
YAGNPHDLFTPEVGTSKPHTGSQPVQVFCPDCGFANIFWGKCTESGEIIEHYGRRCQGWF
EDDDGARAQCDYRFRFKSCPHCGAENDIAARRCHQCQEVLVDPDDMLKAALKLKDALVLR
CGGMSLESGQDVKGEWLKITYYDEDGTDTSERFRLTTAAQRMAFEQVFLRPHQRAPGVTL
KWQTAADIIAQQALLRYPDFVVARRRGQWWQIREKVFDYQGRFRRADSLA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcttttacactacgcccttatcaacaagaagcggtggatgcgacgctagcttatttt
cgtcgccataccgaaccggcgctcattgtcttacccactggcgcaggtaaaagtctggtt
attgctgaattagcaaaactggcgcgtgggcgtgttttggtactagcgcatgtcaaagaa
ctggtggcgcaaaatcatgccaaatattgtgcttatggtttagaagcagacggtttagag
gccgatatttttgccgctggcctgcaacaacgccaaagtgaggggaaagtggtttttggc
agtgtgcaatccgtggcacggaatctgtcactgtttgatagtgccttttcgctgctcatt
atcgatgaatgtcatcgaatcagtgacgcagatgacagccaatatcagcaaattattcag
catttacgcacgactaacccgcgtttacgtttgctgggactgacggcgaccccttaccgc
ttgggcaaaggctggatttaccaattccactatcacggtatcactcgaggtgatgggaaa
tccctattccgcgattgtatttatgaattgcccctgcgttatatgattaagcacggtttt
ctggtgccaccggagcggctggatatgccggtcgtgcaatatgatttcagtcggttgacc
agcaatagcgacggcatgttccgtgaagcggatttagaccgcgagcttaaacagcagcaa
agaatcaccccacatattgttagtcagatagttgaatatgccgcccatcgccgtggcgtg
atgatttttgccgccactgtcgaacatgccaaagaagtctacgggctactccccaaaggc
caggcggcgctggtgagtgccggaacgccccccgccgagcgggatgctttaatcactgct
tttaagcagcagaaattacattatttggtgaatgtggcggtcttaacgaccggttttgat
gccccacatgttgatttgattgcaattcttcgcccaaccgaatccgtcagcttgtatcaa
caaattgttgggcgcggcttgcggctctcgccgggcaaagaagattgtctgattctggat
tatgccggcaatccccacgaccttttcaccccagaagtgggtaccagcaaaccccacacc
ggcagccagccagtacaagtcttttgcccagactgcggttttgccaatattttctgggga
aaatgcaccgaatccggcgagattattgagcattatggccgccgctgtcagggctggttt
gaagatgatgatggcgcacgagcccaatgtgattaccgcttccgctttaaatcctgccca
cattgcggggcggaaaatgatattgccgcccgccgctgtcatcagtgtcaggaggtgctg
gtcgaccccgatgatatgctgaaagctgccctgaaattaaaggacgcgctggtattgcgt
tgcggtggaatgagtttggaaagtggccaggatgtaaaaggcgaatggctaaaaatcact
tattacgacgaagatggcaccgataccagtgagcgttttcgcttaactaccgccgcccag
cggatggcatttgagcaagttttcctgcgccctcatcaacgggcgcctggggttacactg
aaatggcaaactgccgccgatatcatcgctcagcaggcgctactgcgttatccggatttt
gtggtcgcccgccgccgtggacaatggtggcaaatcagggaaaaggttttcgattatcag
ggacgttttaggcgggctgactctctcgcctaa
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