Yersinia rochesterensis: CH54_4111
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Entry
CH54_4111 CDS
T03609
Name
(GenBank) L,D-transpeptidase catalytic domain protein
KO
K21470
L,D-transpeptidase YcbB
Organism
ykr
Yersinia rochesterensis
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ykr01002
]
CH54_4111
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ykr01011
]
CH54_4111
Peptidases and inhibitors [BR:
ykr01002
]
Cysteine peptidases
Family C82
CH54_4111
Peptidoglycan biosynthesis and degradation proteins [BR:
ykr01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
CH54_4111
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AJJ37741
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Position
4477243..4479117
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AA seq
624 aa
AA seq
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MSVEKRNPRPVLALYCAVICSVMPVFTASATVPMMPVDSSSAQKSPPQSMSVAQSRSQLL
AVLPKTITPFYSSELAVLYAANNMQPMWQDQTAVQHFQQQLAEVALSGIQPQFMQWVKWL
SDPAITGLARDVILSDAMLGYLHFISGVGANGSVWLYNNVPYKMAMPPATILNRWQQAVH
EGNTALYLASLAPQHPQYEKMRLALKQMLADRRPWPQMANGPSLRPGQLSDDIPALREIL
DRTGMLHPVASTPVHTPEVIPADNPAVAVVNDDLSVDEEKNRAQAHSLVVSPSAAPVADT
PASEGVVAPSAAPLAATVTVTDNVYTPELMEAVKRFQQWHGLSDDGVIGARTREWLNISP
QTRATLLALNIQRLRILPGRVDNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLM
SSALNNVVVNPPWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDW
SMISPNNFPYRLRQAPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRV
NKASDLANMLLQDAGWNDARVSSTLKKGDTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRT
DIYNYDMTVRSGSQIAHQAELLLQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtagagaaaagaaatccgcgacctgtattagcgttatattgcgctgtgatttgt
agcgtaatgcccgtatttacagcatcggccacagtgccgatgatgcctgttgattcatct
tcagcgcaaaaatcaccgccacaaagcatgtcggtcgcacaaagccgctctcaattattg
gcagtgttaccgaaaactatcacgccgttctattcttctgaattagccgtgctctatgct
gccaataatatgcagccaatgtggcaagaccagactgctgtccagcatttccagcaacaa
ttagcggaagtggctctctccggtattcagccgcaatttatgcaatgggtgaaatggctc
agtgatcctgctattaccggcttggctcgcgacgttattctgtccgatgccatgttaggt
tatttgcactttatctcaggcgttggtgcaaatggtagcgtctggctctacaacaatgtg
ccgtacaagatggcgatgccaccggcgacgattttaaatcgctggcaacaagctgtacac
gaggggaacaccgcgctttatctggcatctctggcacctcaacatcctcaatatgagaaa
atgcgtctggcgctgaaacagatgctggcagaccggcgtccgtggccacaaatggccaat
ggcccgagtttacgtccagggcagttaagcgacgatattccagcgctgcgggagattctc
gacagaaccggcatgttgcacccggtggcgtctacaccagtgcacaccccggaggttatc
ccggctgataatcctgcggtcgcggttgttaatgatgacctctcggttgatgaagagaaa
aaccgtgctcaggcccacagtttggtggttagcccatcagcagccccggttgcagacact
cccgctagcgaaggggtagttgcgccatctgcggcaccactggccgcgactgtcacggta
actgacaatgtctatacgccagagctaatggaagccgtcaaacggttccaacagtggcat
ggtttgagtgatgatggcgttatcggtgcccgtactcgcgaatggttgaatatttctcca
caaacacgggcgacattattagccttaaatattcagcgcttacgcattttgccggggcgg
gtggataacggcatcatggttaacattccaaactattcgctgaattattataagaatggt
gccgaggtgctttcgtcacgcgtgattgtcggccgcccaagccgtaaaacgccgttgatg
agcagcgcgttgaataatgtagtggttaacccgccgtggaatgtgccgacctctctggtg
cgccaggatatcgtgccgaaagcgcgttacgattccagttatttccagcgccatggctat
acggtattgtccggttggagcaatgatgccgaagttgtcgacccgtcaatgattgactgg
agcatgatttcaccgaataacttcccatatcgcctgcgtcaggcaccgggtgccagcaat
tcattagggcggttcaagttcaatatgccaagctctgatgctatctatttgcatgacacg
ccgaaccatggtttgttccagaaagatattcgggccttaagctcgggctgtgttcgcgtg
aataaagcgtctgatttagccaatatgttgttgcaggatgcgggttggaatgatgctcgt
gtttcctcgaccctgaaaaaaggggacaccacttatgtcaacattcgccaacgtattccg
gtgcaactgtattatctgacggcatgggtggctgaagatggtaaaccacagtttagaaca
gatatttacaattatgatatgacggtgagatccggttcacaaatcgctcatcaagctgaa
cttttgctgcaataa
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