Yersinia rochesterensis: CH54_461
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Entry
CH54_461 CDS
T03609
Name
(GenBank) type I secretion system ATPase family protein
KO
K12530
ATP-binding cassette, subfamily B, bacterial RtxB
Organism
ykr
Yersinia rochesterensis
Pathway
ykr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CH54_461
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ykr02000
]
CH54_461
02044 Secretion system [BR:
ykr02044
]
CH54_461
Transporters [BR:
ykr02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
CH54_461
Secretion system [BR:
ykr02044
]
Type I secretion system
RTX toxin transporter
CH54_461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
AAA_18
Peptidase_C39
AAA_22
AAA_PrkA
ABC_ATPase
DUF87
Zeta_toxin
AAA_5
AAA_33
nSTAND3
AAA_29
AAA_21
FCSD-flav_bind
Cytidylate_kin
PRK
Mg_chelatase
Pex24p
Motif
Other DBs
NCBI-ProteinID:
AJJ36629
LinkDB
All DBs
Position
complement(493594..495720)
Genome browser
AA seq
708 aa
AA seq
DB search
MGNHIHSSLVCAARLLRLAGVNAEPVEIFSRNAAIDSAMIVTFTSLKRYLSQLSRATATR
FKVKKKPLKTIKAGQLPLAFRDTQGRFILLAGLNDNQALLQYPDSNKPKVITYQQLSELW
GGVVLCCHSSRFGVRWFIPVLLHHRKSLIQVLVLSILLQFLALISPLFFQVIMDKVLVHN
ALTTLDVLIIVLLVVGIYEVSLNFLREYIFSHTTTRVDILLGGKLFNHLIKLPLSYFKQR
HVGNIVARVRELDNIREFITGTALTLCVDVVFTFVLFIVMWCISPLLTAIILGTLPFYLL
LAALTTRPLQKKVEMLCGCAAQNGAFLTETVSGVETVKSLALEPQMQQRWEIQTRDFAQA
NFQVQNLQNFSSQCAQLLQKLAGALVIVIGAYQVMSVQLSIGQLIAFNMLATQALMPMSK
LVDLWQQSIRAQVGLMLISDILSLPVEHATGAAPPNRQINGDITLANVTFRYRPDLEPVL
NNFSLSLRAGEHIGLVGPSGSGKSTVARLLQRLYIAEQGVINIDGCPISNFPPEYLRRQI
GVVMQENYLFNRTVRENIAYSRPTASLSEVVDAACLAGADAFILALPLGYDTVLSEGGTS
LSGGQRQRIAIARTLLANPRVLIFDEATSALDDESQAEVQKNMAQIIANRTVITIAHRLS
TVRHCHRIAVITQGRVSELANHDQLLAQKGVYAQLWQQQAVFSLGGAT
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcacattcactcttctttagtctgtgcggcgcggttacttcgtttagcgggg
gttaatgccgagcccgtggagatattcagtcgaaatgcggctatcgatagcgccatgata
gttacatttacgtcattaaaacggtatttatcacaattatcacgcgcgacagccacccgt
tttaaggtcaaaaaaaaaccgttaaagacaatcaaagcagggcaattaccactggcattt
cgtgatactcaaggccgttttatcttattggctggattaaatgataatcaggcattattg
caataccctgacagcaataaacctaaagtgataacttatcaacaacttagtgaattatgg
ggcggagtggtactctgttgccactcttcgcgttttggtgttcgttggtttattccggtt
ttattgcatcaccgtaaatcgctgattcaagtattagtattatcaatattattgcagttc
ttagcattgatatcaccgcttttctttcaggtcatcatggataaggttttggtccataat
gcactgacgacactcgatgtattaattattgtattgctggtggttgggatatatgaagtt
tcattgaatttcctgcgtgaatatatttttagtcatactaccactcgagtggatatttta
ttgggtggaaaactatttaaccacttaattaaattgccattaagttattttaagcagcgc
catgtggggaatattgtcgccagagtgcgggaattagataatattcgtgaatttattacc
ggcaccgccctgactttatgcgtcgatgttgtttttactttcgtattatttattgttatg
tggtgtatttcaccgctcctgaccgccattattctgggcacattgcctttttatctgtta
ttggcggcactgactacgcggccattgcaaaaaaaagtcgaaatgctgtgcggctgtgca
gcacaaaatggcgcgtttttaaccgaaactgtttcgggggtcgaaacggtaaaaagtttg
gcgctagagccgcaaatgcagcagcgctgggaaatacaaacgcgggattttgcccaagcc
aatttccaagtgcaaaatctgcaaaacttcagcagtcaatgtgctcaattactgcaaaag
ctggcaggggcactggttatcgtcattggtgcctatcaagtgatgtctgtacagctcagt
atcgggcaattaattgcctttaacatgctggccactcaggcattaatgccgatgagtaaa
ttggttgatttatggcaacagagcatacgagcccaagttggactaatgctgatatccgat
atattgagcttgccggtcgaacacgctaccggtgccgcaccgcctaaccgccaaataaac
ggagatatcacactggcaaatgtgacttttcgttatcgccctgatcttgaacccgtgctg
aataatttctcattgtcactgcgtgcgggcgagcatatcgggctggtcggcccatcaggc
tcgggtaaaagtaccgtcgcgcggttattacagcgcctttatatagctgaacagggagtt
attaatattgatggctgcccgataagtaatttccctcctgaatacttacgccgtcaaatc
ggtgtggtgatgcaggaaaattacctgtttaaccgcacagtgcgtgaaaacattgcctat
tctcggccaaccgcttcgctcagtgaggtcgtcgatgccgcctgtttggccggtgccgac
gcctttattctggccttgccgctagggtatgacactgtgttgtcagagggcggaacctct
ctttctggtgggcaacgtcaacgtattgctattgcccgcacgttgctggcgaacccccgc
gtgttgatttttgatgaagcaaccagtgctctggatgatgagtcacaggccgaagtacag
aaaaacatggcccaaattatcgccaatcgcacggttatcaccattgctcaccgtctttcg
acggtacggcactgccatcgtatcgccgtcataactcaaggccgggtgtctgagctggca
aatcacgaccaactgctggcccaaaaaggcgtttatgcccaactttggcagcagcaagcc
gtcttttcccttgggggggcgacatga
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