Yersinia rochesterensis: CH54_477
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Entry
CH54_477 CDS
T03609
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ykr
Yersinia rochesterensis
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ykr03016
]
CH54_477 (rnb)
Enzymes [BR:
ykr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH54_477 (rnb)
Transfer RNA biogenesis [BR:
ykr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CH54_477 (rnb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AJJ34813
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Position
512294..514228
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIVPDHPLLRDAIQCRPVRELTH
DFQTGDWAVAEMRRHPLKGDRAFNADLTAFITDGEDHFVPWWVTLARHNLEHEAPAMVES
ALHDANLQREDLTALNFVTIDSASTEDMDDALHVKDNGDGSLLLTIAIADPTAYVDENSE
LDLIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTIAADGALGDDIQF
SAAWVESKAKLVYDEVSDWLEGQGDWQPQNADIAEQITLLKRVCEARSNWRQAHALVFKD
RPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCAAIALRDNLGFGIYNVHAGFD
PALVEQAANVLQANGVEADPQALLTLPGFCELRRHLDTLPTQFLDSRIRRFQTFAEISTV
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQHAEKPQDEITVQLAERRRLNRM
AERDVGDWLYARYLQPMAGTDTRFPAEIIDVTRGGLRLRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGETVYSQNDKIEVRIAEVRMETRNVVARPVV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagactccg
cgcgtcgaaggcgtcgttaaaggtactgagaaaggctttggctttcttgaggtagacggg
cagaaaagttactttattccgccgccacagatgaaaaaagtcatgcatggcgatcgcatt
attgcgacccttcataccgataaagatcgtgaaattgctgagccggaaaccctggttgag
ccatttttatcgcgctttgttggccgtgtgcaacgaaaagatgaccgcctgtctatcgtc
cctgaccatcctctgctgcgcgatgccattcaatgtcgtccggtgcgcgaactgacgcac
gatttccaaaccggtgattgggccgtagccgaaatgcgccgccatccattaaaaggtgac
cgggcttttaatgctgatctgactgcttttattactgatggtgaagatcatttcgtgcct
tggtgggtcacattagcgcgccataatctggagcatgaagcgccagcgatggtggaatca
gctctgcatgatgccaatctgcaacgtgaagatttgactgcgcttaattttgtcactatc
gatagcgccagcaccgaagatatggatgacgccttgcatgtgaaagacaacggagacggt
tctctgttgttgaccattgccattgcagaccctactgcttatgtcgatgagaacagtgag
ttggatttaattgcccgcaaacgcgcatttaccaactatctgccgggctttaatatcccg
atgctgccacgcgatttatccgacaatctctgctcactgcgcccgaatgaacgccgcccg
gtattggtgtgccgtgtcactattgccgctgatggtgcgctgggtgatgacattcaattc
tcagccgcttgggtagaatcaaaagccaagctggtctatgacgaagtgtctgactggtta
gagggtcagggtgactggcagccgcaaaatgctgatattgcagaacaaatcacattactg
aaacgtgtttgtgaagcgcgcagcaattggcgtcaggcccatgcactggtgtttaaagac
cggccggactaccgcttcctattgggcgaaaaaggcgaagtgctggatatcattgtggaa
catcgccgcattgctaaccgcattgttgaagagtgcatgattgccgccaacgtctgcgcc
gctattgcgctgcgtgataatcttggctttggcatttataacgtgcatgccggatttgat
cctgcgctggttgagcaagccgccaatgtgttgcaagccaatggggtggaagccgatcca
caagcgctgctgactctacctggtttctgtgaattgcgccgtcatcttgataccttgccg
acccagttcctcgacagccgtatccgtcgtttccaaacattcgctgaaatcagtacagtt
cctggcccccacttcggtttggggcttgaagcttacgccacctggacctcgccaattcgt
aaatacggcgatatggtcaatcatcgcctgctgaaagccattattaccggccagcatgca
gagaagccacaggatgaaatcacggtgcaattagctgaacgccgtcggttgaatcgcatg
gctgaacgcgatgtcggggattggttgtatgcccgttacctgcaacctatggctggcaca
gatacccgcttccctgcggaaatcattgatgtcacccgcggtggtctacgcctacgctta
ctggataacggcgcagtggcctttattccggcaccctttattcacgcggtacgtgatgaa
atggtatgcagccaggaaactggcaccgtgcagatcaaaggtgaaacggtctacagccag
aacgataaaattgaagtgcgcattgcagaagtgcgaatggaaacacgcaacgtggttgcc
cgcccagtggtttga
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