KEGG   Yarrowia lipolytica: 2906025
Entry
2906025           CDS       T01033                                 
Symbol
YALI2_A00383g
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
yli  Yarrowia lipolytica
Pathway
yli03018  RNA degradation
yli03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    2906025 (YALI2_A00383g)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    2906025 (YALI2_A00383g)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yli03019]
    2906025 (YALI2_A00383g)
   03041 Spliceosome [BR:yli03041]
    2906025 (YALI2_A00383g)
Messenger RNA biogenesis [BR:yli03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     2906025 (YALI2_A00383g)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     2906025 (YALI2_A00383g)
Spliceosome [BR:yli03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    2906025 (YALI2_A00383g)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 2906025
NCBI-ProteinID: XP_065950113
LinkDB
Position
A:complement(join(2135486..2135872,2135970..2135972))
AA seq 129 aa
MLPLSLLNAAQGQPMLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYY
VRGSNIKALQLPDELLHSIKQQYSQQREQRQRQQQLEQGGQFGNRRGNRNYNNQSNNPNQ
RQRGGGRRY
NT seq 390 nt   +upstreamnt  +downstreamnt
atgctacccttatccctactcaacgcagcacagggtcagcccatgctggtggagctcaaa
tcgggcgagtccctgagaggccacctgttgaaatgtgaccactggatgaacctcacgctc
aaggaggtcgaagagttttctgcatcgggcgaaaacaccgccaccgtgtccgagtactat
gtacgaggctccaacatcaaggctctccagctgccagacgagctactgcacagcatcaag
caacaatacagccagcagcgggaacagcgacagcgacagcagcagctggagcagggcggc
cagtttggcaaccgacgaggcaaccgaaactacaacaaccagagcaacaaccccaaccag
cgacagcgaggtggaggacgacgatattag

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