Yarrowia lipolytica: 2906954
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Entry
2906954 CDS
T01033
Symbol
YALI2_C00407g
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
yli
Yarrowia lipolytica
Pathway
yli03018
RNA degradation
yli03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2906954 (YALI2_C00407g)
09123 Folding, sorting and degradation
03018 RNA degradation
2906954 (YALI2_C00407g)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yli03019
]
2906954 (YALI2_C00407g)
03041 Spliceosome [BR:
yli03041
]
2906954 (YALI2_C00407g)
Messenger RNA biogenesis [BR:
yli03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
2906954 (YALI2_C00407g)
mRNA degradation factors
5'-3' decay
Lsm complex
2906954 (YALI2_C00407g)
Spliceosome [BR:
yli03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
2906954 (YALI2_C00407g)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Endonuc_BglI
Motif
Other DBs
NCBI-GeneID:
2906954
NCBI-ProteinID:
XP_500866
UniProt:
Q6CEP6
A0A1D8N7R5
LinkDB
All DBs
Position
C:join(2793930..2794166,2794238..2794258)
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AA seq
85 aa
AA seq
DB search
MSEQAEPQVSQILPLELVDKCIGSKILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVNTK
TGKETNHSKLLLSGKSIYMLVPGGL
NT seq
258 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaagctgagccccaggtatcgcaaattctgcctctggagctggtcgacaag
tgcataggatccaagattctggtgctggtcaagtccaaggtcgagttcactggcactctg
gtcggattcgacgatttcgtcaacatggtgctggaggacgtgaccgaggtcaacacaaaa
actggcaaggagaccaatcacagcaagctgttgttgagtggaaagagcatctacatgctt
gtccctggaggactttaa
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