KEGG   Yarrowia lipolytica: 2907714
Entry
2907714           CDS       T01033                                 
Symbol
YALI2_F00917g
Name
(RefSeq) Endoribonuclease YSH1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
yli  Yarrowia lipolytica
Pathway
yli03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    2907714 (YALI2_F00917g)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:yli03021]
    2907714 (YALI2_F00917g)
   03019 Messenger RNA biogenesis [BR:yli03019]
    2907714 (YALI2_F00917g)
Transcription machinery [BR:yli03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     2907714 (YALI2_F00917g)
Messenger RNA biogenesis [BR:yli03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     2907714 (YALI2_F00917g)
    U7-dependent histone pre-mRNA processing factors
     2907714 (YALI2_F00917g)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 Lactamase_B_2 RMMBL Lactamase_B_3 DUF6047
Other DBs
NCBI-GeneID: 2907714
NCBI-ProteinID: XP_065950552
LinkDB
Position
F:complement(join(594070..596463,597496..597519))
AA seq 805 aa
MAEKRESQTDDSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYD
EFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGA
ESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLF
TGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKC
LLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRR
FRDQKTNPFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLLERWAPDPKNTLIL
TGYSVEGTMAKQIINEPNEIPSAQNPDLKVPRRLAVEELSFAAHVDFQQNSEFIDLVDSK
NIILVHGELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEVELAFKGVKVAKTVGKM
AEEKPHVGQIISGVVVQKDFNYGLMGVADLREHVGLSTSSVLERQTVTVNAGVDLVKYHL
EQMFGYVEMRETENVKIEEMEDDVAEEEEDKEVKQEVEDVTMEGEVKDETAEEVKKEEEV
AEEFKQEVEGDSDTSAGTTFVVMNSVTVKHTPTSCTIEWVGSCLNDSIADAVLAILLTVD
NSRASVKMSSKQCAHSHGHEDGHSNSSLDERVLQLSSILKAQFGDSYIVSEDGKSANIKI
DAMEATISFSDLSVTGSPPPLVQRVQVAVDRAISLVAPLAQKLSAVDLVEGFKAIENVKD
REENGEVKAEDEEKVKAEEKVKEEE
NT seq 2418 nt   +upstreamnt  +downstreamnt
atggctgaaaaacgcgaatcgcagaccgacgactccgacacattttcattcgtggcgctc
ggaggtggccgagaagttggccgatcatgtcacgtcatctcgttcaaaggcaagactatc
atgctcgatgccggcgtgcatcctgcccattccggcctcgcctccctgcctttctacgac
gagttcgatctctcaaccattgacattcttctcatttcacatttccacctggaccacgct
gcttctctcccttatgtgatgcagaagaccaacttcaagggccgggtattcatgacccat
cccaccaagggtatttacagatggctcttgtccgattttgtgcgagtcacctctggagcc
gaatcggacccagatctctactcggaggccgacctcaccgcctcgttcaacaaaattgaa
accatcgactaccactccaccatggaggttaacggagtcaagttcacagcgtaccatgcc
ggtcacgtgctcggagcagccatgtacacgatagaagtcggtggcgtcaaggtgctgttc
accggcgattactctcgagaagaggaccgtcacttgaaccaggccgaggtgccgcccatg
aaaccagacattctcatttgtgaaagcacatacggcaccggaactcacttgccgcgtcta
gaacgtgagcagagactgacgggactgattcacagcacactagacaagggcggaaagtgt
ttgttaccagtatttgctcttggacgagcccaggagattcttctcattctcgatgagtac
tgggaagcccaccctgacctccaggagttctccatctactacgcctctgctctggccaaa
aagtgtatcgctgtttaccagacttacatcaacatgatgaacgacaacatcagaagacgt
ttccgagaccagaaaacaaacccgttccggttcaagtatatcaaaaacataaagaatttg
gaccgtttcgacgacatgggtccctgtgtgatggtggcgtctcctggaatgttgcagagc
ggtgtttcgaggtctctgttggagagatgggcacctgacccgaaaaacacgctcattttg
acgggttactcggttgaaggaactatggcgaaacagattatcaacgagcctaatgagatc
ccctcagctcagaatccggacctgaaggttccgcgacgtttggcggtggaggagctctcg
tttgctgcccacgtggatttccagcaaaactctgagttcatcgatctcgtggattccaaa
aacatcattctggtccacggtgagctcaacaacatgcagcgtctcaaggctgctcttttg
gccaagtatcgaggcctgaagaacagtcctagagagaagaccatttacaatcctcgaaac
tgcgaagaagtcgagctcgcgttcaagggcgtgaaggtggccaagacggttggcaaaatg
gccgaggaaaagccgcatgttggtcagataatttctggagtggttgtgcagaaagacttc
aattacggactcatgggcgttgctgacctgagagaacacgttggactgtcaacctcttcc
gttctggagcgacagactgtgacggtcaacgcaggagtggatctggtcaagtaccatctc
gaacagatgtttggatacgtggaaatgagagagacggagaacgttaagattgaggagatg
gaggacgacgtggctgaggaggaggaggacaaggaggtgaaacaggaggtagaagatgtg
accatggagggtgaagtcaaggatgagaccgcggaggaggtcaagaaggaggaggaggtt
gcggaggagttcaaacaagaggttgagggtgattccgacacttctgcgggaaccacattc
gtcgtgatgaactcggtcacagtgaaacacactcccacaagttgcaccattgaatgggtg
ggctcctgtctcaacgactccattgccgacgctgttctggccattttgctgacagtggac
aactccagagcgtcggtgaagatgtcttccaagcaatgtgcccattctcatggccatgaa
gacggccactcaaactcctctctcgacgaacgagttctgcagctgtcttcgattctgaaa
gctcagtttggagactcgtacattgtttctgaggatggcaagtcggccaacatcaagatc
gacgccatggaagccacgatttccttctctgatttgtctgtgaccggctcacctcctcct
cttgttcagagagtccaggtggctgtcgatcgggccatttcgctcgtcgctcctctggct
cagaagctgtcggccgtggacctggttgaaggtttcaaggccattgagaacgtcaaggat
agggaagagaatggggaggtgaaggcagaagatgaagagaaagtcaaggcggaggagaaa
gtcaaggaggaggagtaa

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