Yarrowia lipolytica: 2907716
Help
Entry
2907716 CDS
T01033
Symbol
YALI2_F00915g
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit pta1
KO
K06100
symplekin
Organism
yli
Yarrowia lipolytica
Pathway
yli03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
2907716 (YALI2_F00915g)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yli03021
]
2907716 (YALI2_F00915g)
03019 Messenger RNA biogenesis [BR:
yli03019
]
2907716 (YALI2_F00915g)
Transcription machinery [BR:
yli03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
2907716 (YALI2_F00915g)
Messenger RNA biogenesis [BR:
yli03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
2907716 (YALI2_F00915g)
U7-dependent histone pre-mRNA processing factors
2907716 (YALI2_F00915g)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
T3SS_ExsE
DUF5388
Motif
Other DBs
NCBI-GeneID:
2907716
NCBI-ProteinID:
XP_504968
UniProt:
Q6C2Z4
LinkDB
All DBs
Position
F:complement(join(610067..612094,613177..613419))
Genome browser
AA seq
756 aa
AA seq
DB search
MSLTEQLASLGQVADMAAKDAALYEQYVPSLLELASRPEKELQQWLADFLLDALASVLAL
EKRRELALKALTVVDKLLNGEPKTPILLSALIYPLVFSAVSLNPKLSSEWSTLTSLKERI
TSIWSNDPSPSVEIACIKFAQQLVLVQSRGQSGPADPRLAARSKPSAEANMSMVPPNHPL
IHRSLEAEGQGSLDRLLGNLTGDDLSHDNQKIAEPIFTATVFALAPILKQRPEYGNRILQ
TVLAVDPVAMETKFTSKLAVRFCEKSLKMLVTHCLRNKIHVQLRHRMERFLAEVGRKRPA
PVDDHVTKRQKTEEPTTNASTPTPVSMSTTMPPNADSYSALFTLIPANDPLVAFDARTLP
QQLALQIALTGLLSVDEAVLRSRVGVVKQRWDNWQQQEKAKEEAKKSRSESRDIQNRRSE
SRDYRSGSREDDDDERDDSRSRGRAQSHNTGSRSRSRDVSMESRDSPVSRDSSLDSRVSS
DYSQTETDSAVTFQLPPPEPLSESEKLTAGTEIVSRFLTQKDVAVATAKSLDIQKNAISK
LAINEWTGGSWMVILSRLLSRGLAYDPETEPADSLKVQLSTHIRNQLLNMATTAFTANFE
DVMTWLNEEWYSELIRYGKVTPATSVYYEYASRIMDTLVQTIDPDNWKYFIRLVGELPEL
DYGLVSKLKHLLIDPDRSVIGVRSLKYLIMLRPPTRDYCLDVIEEVYQENESLRGGFKQV
LGKYRPLVVEGVERKMLEVKKEEASEEPKAQVKQEQ
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgtcattaacagaacagctggcgagtcttggccaggtcgcagacatggccgccaaggac
gccgcgctatacgagcagtatgtgccgtctctactggagctggcttctcgtcccgagaag
gagctgcaacagtggctggcggactttctgcttgatgcgctggcgtcggtattggcgctg
gagaaacgacgggagctggcgctcaaggcgctgacggtggtggacaagttgctgaatgga
gagcccaaaacccccattctcctttccgccctcatctaccccctggtcttctccgcggtc
tccctcaacccgaaactctcctccgaatggtccactctgacctccctcaaagagcggatc
acgtccatctggagcaacgacccttcaccctcggtcgaaatagcatgcatcaaatttgcc
cagcagctcgtgctcgtccagtcacggggccaatcaggtcctgctgacccgcgtctggcc
gccagatcaaagccgtcagccgaggccaacatgagcatggtgccgcctaaccacccgctc
atccacagatcactcgaggccgagggccagggtagtctggaccgcctcctaggcaacctc
actggtgacgacttgtcacatgacaaccagaaaatcgcagaacccattttcacagcaacc
gtgtttgctctggcccccattctcaaacaaagacccgagtacggcaacagaattctgcaa
acggtgttggcggtggacccggtggctatggagacgaaattcacttccaaactcgccgtt
cgcttctgcgaaaagtcgctcaaaatgctggttacccactgcttacgtaacaagatccac
gtgcagctgcgacacagaatggaacggtttctggccgaggtgggccgaaaacgaccggcc
ccagtcgacgatcacgtgaccaagcgccagaagacggaggagccgaccaccaatgcatct
acacctactcctgtatccatgagcaccaccatgccccccaatgcagactcatatagcgct
ctgttcactctgattcctgccaacgacccgttggtggctttcgacgcccggacgttaccc
cagcaactggcgcttcaaatcgcgctcaccggtttgctgagcgtagacgaagcggttctt
agaagtcgagttggagtggtgaagcaaagatgggacaattggcaacaacaagaaaaggcc
aaggaagaggccaagaagtccagatctgagtcacgtgatatccagaacagacgaagcgag
tcgcgagactaccggtccgggtcccgtgaagacgacgacgacgagagggacgactcccga
tctcgcggacgggctcagtcgcacaacaccggttcccgctctcgatcccgcgacgtctcc
atggaatcacgcgactctcctgtttcacgtgattcctcgctcgactcccgagtttcttcc
gactattcacagaccgaaaccgactcagcagtcactttccaactgccaccccccgagccc
ctttcagagtctgaaaagcttacggccggaaccgaaatcgtgtcgcggtttttgacacaa
aaggacgtagcggtggcaacagccaagtcgctggatatccagaagaatgccatttccaag
ctggctatcaacgaatggaccggcggttcgtggatggtgattttgagtcgattgttgagc
cgtggtcttgcttatgaccccgaaaccgagcctgccgactctctcaaggtccaactttcc
actcacattcgaaaccagctgttgaacatggccactacggcgtttacagcgaatttcgag
gacgtcatgacctggctcaacgaagaatggtactcggagctgatccggtacggtaaagtt
actccagctacgtctgtctactacgagtatgcttcccgtatcatggacactcttgttcag
accattgatcccgacaactggaagtatttcatcagactggtgggcgagcttcccgagctc
gattacggcctggttagtaagctcaagcatcttctgattgaccctgatcggtcggttatt
ggtgttcggtcgctcaagtatcttattatgctgcgtcctcctacccgagactactgtctc
gatgtcattgaggaggtttaccaggagaatgagagtctgagaggcggtttcaagcaggtt
ctgggcaagtatagaccgttggttgttgaaggagttgagaggaagatgttggaggtgaag
aaggaggaggcttctgaggagcccaaagcacaggtgaagcaggagcaatag
DBGET
integrated database retrieval system
