Yarrowia lipolytica: 2908320
Help
Entry
2908320 CDS
T01033
Symbol
YALI2_F00274g
Name
(RefSeq) Virulence protein SSD1
KO
K18748
protein SSD1
Organism
yli
Yarrowia lipolytica
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yli03019
]
2908320 (YALI2_F00274g)
Messenger RNA biogenesis [BR:
yli03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
2908320 (YALI2_F00274g)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
OB_RNB
Motif
Other DBs
NCBI-GeneID:
2908320
NCBI-ProteinID:
XP_505385
UniProt:
Q6C1S7
A0A1D8NNB6
LinkDB
All DBs
Position
F:join(1877527..1877671,1877737..1881230)
Genome browser
AA seq
1212 aa
AA seq
DB search
MSGNNNGSNNNGNNANGNQNLLPNPSSRGPRNLHIAHRRSPSELTPLMVEQIALQQQIDI
LQAQQQQILAQQQQFIHQPNLMPPPPMQQSYVTATGPFGQFGVQPVHQMGPPQSGGHRRA
QSSSHPNQHQQQPQQHFQGGHQSTPSQSGGGDRGHNRRQSLGLPEAIRAAAIEQQKRQGG
AGAVPASPQRNHSSGSNSSNPGSFKFPPTADDSSPTKSHSRSRSMAFGQQKRNQSPSRFQ
FPAGGHGSSPSTGGNFHPGHGHSRSNSRNFDQGGFVPGHRHRGSSVSSMHAFNSYGGGQQ
QRKSLFAPYLPQASLGQLMDQGRLVSGVLRVNKKNRSDAYVSTDGILDADIFICGSKDRN
RALEGDLVAVELLNVDQVWDSKREKEEKKKRKDQTTGDISDTVETTSGGANNSGGLQRRG
SLKQRPQQKRNDDVEVEGQSLLLSEEEELTDAAKPLYAGHIVAVIERVPGQLFSGTLGLL
RPSSQATKDRQEREGGHNNNNNNQHQEPPRPKIVWFKPTDKRVPLIAIPTEQAPKDFVEN
HESYANTLFAASIKRWPITSLHPFGTLVEEIGDANDDEIQIEAILRDNNFTADVFPDSAL
RAVPEETATGTPLTDEETEGRRDFTEEYTLGLSPNGILADQAFHIKKLGDDKIELGVHVL
DVTHYVQSNSALDREAKKRGSSCFLVQRDLNMFPDNFNSNFALTPGNNRLTISVVFEIDA
TTFDVSDTWIGTSYINTKQKLDYATVERIFDDKGGDDKAQIQAILAEGLLSQTDIDYVKT
LRLLSMEFKRDRFNCKNLNLGGKDLPALSLLNQIDDENLPISTDIYQALQISHIVDEVNI
KVNCAVAQKLYASLGPKAFLRRHSYPLLQKMESFTQKMKNLGVHIDTSSSGALQKCLFQI
ESDDVRRGLETLLLKCMNRAKYYVADKSDELAHYFLNVPVYTHFNAPLRRYADLIVHRQL
KAVLSNFSVPYDESLELLNNAADYCNFKKDSAHNAQEQSVHLFLSQAIAALSQKKQARNG
DIIKEGLVIQVYESAFDVYIPDIGIEKRVHGDQLPLKKAEFIKKDRLLELYWEQGKSSAE
FVPENERKSKGRGGDKDTGNASNNKESLADQVKGQSLDSKSLPSSPKQSLTGGLLAPHRA
ISMNKLENEYCARSDGDGSNSDDELLRDVVTREENGYFIQEIRELQRVPIMLRAELGKTL
PCLTVRTINPFA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtaacaacaatggcagcaacaacaatggcaacaacgccaatggcaaccaaaac
ctgctgcccaacccgtctagcaggggccctcgaaacctgcacattgcccacagacgatcg
ccctctgagctgacccccttgatggtcgaacaaatcgcattacaacaacaaatcgatatc
ttgcaggcccagcagcagcaaattctggcccagcagcagcagttcatccaccagcccaac
ctgatgccccctccgccaatgcagcagtcttacgtcactgccacaggtccctttggccaa
tttggcgtccagccagtccaccagatgggccctcctcagagcggaggccaccgacgggcc
caatcttcttcccaccccaaccagcatcagcagcagccgcagcagcatttccagggtggc
caccaatccaccccctcccagagcggcggaggagacagaggccacaaccgacgacagtcc
ctcggtctgcctgaggctatccgagcagctgctattgagcagcagaagcggcagggagga
gccggggccgtgccggcctcgccgcagcgaaaccactcatctggttccaattcatccaac
cctggatccttcaagttcccccccactgccgacgactcctcgcccaccaagtcgcattcg
cgatctcgatcaatggcctttggccagcagaagcgaaatcagtcgccatctcgattccag
ttccccgccggtggacatggatcgtcaccttccaccggaggcaacttccaccctggccac
ggacactcgcgatccaactctcgaaacttcgaccagggaggatttgttcccggccaccga
cacagaggctcctctgtgtcctccatgcatgccttcaacagctacggcggcggccagcag
cagcgaaagtcgctgtttgctccatacctcccccaggcgtctcttggtcagctcatggac
cagggccgtctggtgagcggtgtgttgcgggttaataagaagaaccgatccgacgcgtac
gtgtccaccgacggaattttggacgccgacatttttatctgtggctccaaggaccgaaac
agagcactcgagggagacttggttgctgtcgagctgctcaacgtcgaccaagtttgggac
tccaaacgcgagaaggaggagaagaagaagcgaaaggaccagacaaccggcgatatttca
gacaccgttgagactacttccggcggagccaacaactcgggaggcctccagcgacgagga
tctctcaagcagagacctcagcagaagcgaaatgacgacgttgaggtcgagggccagtcc
ctgctgttgtccgaggaggaggagcttaccgacgctgccaagcctctctacgccggccac
attgtcgctgtcattgagcgagtacctggccagctgttctctggtacacttggtctgctg
cgaccttcgtcccaggccacaaaggaccgtcaggaacgagagggaggacacaacaacaac
aacaacaaccagcatcaagagcctccccgacccaagattgtgtggttcaagcctaccgac
aagcgggtgcctctaattgccatccccactgagcaggcccccaaggactttgttgagaac
catgagtcttacgcaaacaccctgtttgccgcctccatcaagcgatggcccatcacctct
ctgcatccctttggtaccctcgttgaggagattggcgatgcgaacgatgatgagatccag
atcgaggccattctgcgagacaacaacttcaccgccgatgtattccccgactcggcactc
cgagcagttcccgaagagaccgccacaggcacacctctcaccgatgaggagactgaaggc
cgacgggacttcactgaagagtacactctgggtctgtcgcccaacggtattctagccgat
caggccttccatatcaagaagcttggcgatgacaagattgaactgggtgtgcacgtgttg
gacgtgactcactacgtgcagtccaacagcgctctcgaccgagaggccaagaagcgaggc
tcgtcttgtttcttggtgcagcgggatctgaacatgttccccgacaacttcaactccaat
ttcgcgctgaccccaggtaacaaccggctgaccatctccgtggtgtttgagatcgatgcc
accaccttcgatgtgtcggacacctggatcggcacctcatacatcaataccaagcagaag
cttgactacgccaccgtggagcgaattttcgacgacaagggcggcgacgacaaggctcag
atccaggccattctcgccgagggtctgctgagccagaccgacattgactatgtcaagacc
ctgcgtctgctgtcgatggagttcaagcgggaccgattcaactgcaagaacctcaacctt
ggcggcaaggaccttcctgcgctttctctgcttaaccagatcgacgacgagaacctgccc
atctctaccgacatctaccaggctcttcaaatctcccacattgtggacgaggttaacatc
aaggtcaactgtgccgtggcccagaagctgtatgcttctctgggtcccaaggccttcctg
cgacgacactcataccctctgttgcagaagatggagtctttcacccagaagatgaagaat
ctcggggtgcacattgacacgtcctcctctggtgctctgcagaagtgtctgttccagatc
gagtctgatgacgtccgacgtggacttgagaccctattgctcaagtgcatgaaccgggcc
aagtactacgtcgctgacaagtccgacgagttggcacattacttcctcaacgtgcctgtc
tacacgcattttaacgctcctctgcgacggtacgctgacctgattgtgcatcgacagttg
aaggcagtgctgtccaacttctccgttccctacgacgagtcgctggagttgctcaacaac
gctgcagactactgcaacttcaagaaggactctgcacacaatgcccaggagcagagtgtg
catctcttcctgtcgcaggccattgctgccttgtcgcagaagaagcaggcccgaaacggt
gacatcattaaggaaggtttggtgatccaggtgtacgagtctgcgttcgacgtgtacatt
ccggacattggaatcgaaaagcgagtccacggcgaccagctgcctctcaagaaggccgag
ttcatcaagaaggaccggcttctggagctgtactgggaacagggcaagtcttctgctgag
tttgttcctgagaacgagcgaaagagcaagggacgaggaggcgacaaggacaccggcaac
gccagcaacaacaaggagtctctggctgaccaggtcaagggccagtctctagactccaag
agcctgccttcttctcccaagcagtctctgaccggcggtcttcttgccccccaccgggcc
atttccatgaacaagttggaaaacgagtactgtgctcgatccgacggagatggctctaac
agcgacgacgagttgctgcgggatgtggtgacccgagaggagaatggctacttcatccag
gagattcgcgaactgcagcgagtgcccatcatgttgcgggctgagctcggcaagactctc
ccctgtcttactgttcgaaccatcaatccttttgcctga
DBGET
integrated database retrieval system
