Yarrowia lipolytica: 2908552
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Entry
2908552 CDS
T01033
Symbol
YALI2_F01006g
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
yli
Yarrowia lipolytica
Pathway
yli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
2908552 (YALI2_F01006g)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yli03400
]
2908552 (YALI2_F01006g)
DNA repair and recombination proteins [BR:
yli03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
2908552 (YALI2_F01006g)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
Vip3A_N
Motif
Other DBs
NCBI-GeneID:
2908552
NCBI-ProteinID:
XP_065950559
LinkDB
All DBs
Position
F:complement(join(59171..59717,59771..59913,59991..60106,60157..60623,60665..61311,61356..61697))
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AA seq
753 aa
AA seq
DB search
MSRPEFNIDKTEERSLTAFYKGLEEREEPCDNGGTIRVFERPDGYVLFGVDARYVAERVY
RTLTALKTTDLKQEYVTIATSGFQNFLRDALLNYGLKVEIYGKVDGKWRMTSWELNTNPV
AIAVKTQGDTVGLAFVDLNNHVLGVSEFEDNECMSNLESLLIQLDVKECITSDDKVKAVI
ERAGVSRTDAKSSWFNANEVESNLDNLLAEKLQPTSPELSLKNALGSLACLIKYLSLTSD
ASNHGAFTIKTHTLSQYMKLDASALKALHLMPSVKDSTKSSSLYGLLNVCKTATGSRTLA
QWVKQPLMDKQEIEKRHEIVEIFTSSDLLELTRKFMRQAASLEDVVRVYQMVATLPHIAS
GLRAAQSELLEETFLTQLDSIITGLQKFEELVESTIDLNSIDSHEFMINPDMEEGLNDTK
ARLEACQDRMKDIFASVSDELGMEMDKKLKFENHHVHGWSFRLTRTDASCLRGLSKFKEL
ATLKADLSQEYKKIQARLAKEIIEIACSYCPLLERCSAVLGQLDCILTASRHPCLEAQDT
FIPNDVHLGQDGKKFLVITGPNMGGKSTLSVKAEISIFDCILARVGAGDSQLKGLSTFMS
EMLETSAILKSATDKSLIIIDELGRGTSTYDGFGLAWAISEHIVKMNCFSMFATHFHELT
ELAKEHPDRVDNLHVAAHVGESSDDITLLYKVVPGVSSKSYGTHVAEVVKFPTKVVNMAK
RKAQELDDVNSGTQGKNTLLRIWLPEISFLRRF
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgaccggaattcaacatcgacaagaccgaggagcggtccttgacggccttctac
aaggggctcgaggagcgagaggagccctgcgataatggaggcaccattcgagtgtttgag
cgacctgacggatacgttttgtttggagtggacgctcgatacgtggcagagcgagtctac
cgaacgctcacagccctcaaaaccaccgatctgaagcaggagtacgtcaccattgccact
tctggcttccagaactttctgcgagacgccctgctcaactatggactcaaggtcgagatc
tacggcaaagtcgacggcaagtggcgtatgacatcctgggaactcaacaccaaccccgtg
gcaattgctgtcaagactcagggcgacactgttggtctggcgtttgtggatctcaacaac
cacgtgcttggcgtgtctgagtttgaagataacgagtgcatgagcaacctagagtcactt
ctgattcaattggacgtaaaggagtgcatcacatccgacgacaaggtcaaggctgtcatt
gaacgggcgggggtgtcccgtactgatgcaaagtcttcctggttcaatgccaacgaggtg
gagagcaacctagacaacctgctcgccgagaaactgcaacctacatctcccgaactcagc
ctcaagaacgctctgggttctctagcctgtctcatcaagtacctgtctttgacctccgac
gctagcaaccatggtgccttcactatcaagacacacactctgtcgcagtacatgaagctc
gacgcgtctgcactcaaggctctgcatctcatgccttccgtgaaggactctaccaagtct
tcttctctctacggtcttctcaacgtctgtaagactgctactggctctagaactctcgcc
cagtgggtcaagcagcctcttatggacaaacaggagattgagaagcggcacgagattgtg
gagatttttacgagcagcgacctgctcgaactgacccgaaagttcatgcgacaggctgct
tctctggaggatgtggttcgagtctatcagatggtggccactcttcctcacattgcttct
ggcctgcgagctgctcagtctgaactgctcgaagaaactttcctgacacaactggactct
atcattactggactgcaaaagtttgaggagcttgttgagtccaccattgatctcaactcg
attgactcacacgagttcatgatcaatcctgacatggaggaaggtctgaatgacacaaag
gcccgtctggaggcctgccaagaccgaatgaaggacatttttgcctctgtttccgacgag
ctcggtatggagatggacaagaagctcaagtttgagaaccatcacgtccacggctggagt
ttccgactcacgcgaaccgacgcctcatgtctgcgaggcctgtccaagttcaaggagctt
gccactctcaaggccgatctatctcaggagtacaagaagatccaggctcgactggccaag
gagatcatcgagattgcctgctcgtactgtcctctgttggagcgatgctcggctgttctg
ggccagctggactgcattctcacagcctcccgacatccctgtctcgaggctcaagataca
ttcattcctaacgacgtgcatctcggccaggacggcaagaagttcctggttatcactggc
cccaatatgggcggtaagagtactttatccgtcaaggccgagatttctatctttgactgc
attctggcacgtgtgggtgcaggagactcgcagctcaagggtctgtctaccttcatgagt
gagatgctggagacctctgctattctcaagagtgccacagacaagtctctgatcatcatt
gacgagttgggccgaggtacgtctacgtatgacggatttggactcgcctgggccatttcc
gaacacattgtcaagatgaactgcttcagcatgttcgccacacacttccacgagcttact
gagctggcgaaggagcaccctgatcgtgtggacaacctgcatgttgctgctcacgttgga
gagtcatctgatgacatcactctgctctataaggtcgttcctggcgtatcctccaagtcc
tatggtactcacgtagctgaggtggtcaagttccctaccaaggtggtcaacatggcaaag
agaaaggctcaggagctggatgacgtcaattcaggcacccagggcaaaaatacgcttctg
aggatctggttgccggaaataagcttcttaaggagattttga
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