Yarrowia lipolytica: 2910100
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Entry
2910100 CDS
T01033
Symbol
YALI2_C01090g
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
yli
Yarrowia lipolytica
Pathway
yli03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2910100 (YALI2_C01090g)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
yli03041
]
2910100 (YALI2_C01090g)
Spliceosome [BR:
yli03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
2910100 (YALI2_C01090g)
Complex C
U5 SnRNP specific factors
2910100 (YALI2_C01090g)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
EIF3I
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_DCAF12
BBS2_Mid
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
Amidase_6
WDR54
Motif
Other DBs
NCBI-GeneID:
2910100
NCBI-ProteinID:
XP_501478
UniProt:
A0A1D8N9S0
Q6CCY4
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Position
C:complement(724244..725194)
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AA seq
316 aa
AA seq
DB search
MSLVKKPKTELSTHVASDHVTETSIQLIGHSCPVLACDLSADKEVLSGDLEGLVKLWKLS
RDDTVEQYEVGKHKGAVLGAIFLKHRMVTCSTDTTISIFDGGHKIRNFKGHTAAVNVVCG
GQNDELIYSGSDDGSIGIWDPREKDSESRVIETNYPVIAVATDGHETVWSAGVDDVISRW
DLRMNQQIDFQGADGHTDIVTSLSYNHNRLASHSHDNTVRVWDTKPFMADEKSRELLCLT
DAPNGIEQATLKAKWSSDGEHIISGSADRTVVIWKGDTGRLVRKVGGHSGCVNDVAMVDK
WYVSASSDGTLVVSTL
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggtcaagaagccgaaaaccgaactgtcgacgcatgttgcgtcagatcacgtg
acagaaacgtcgatccagctgattggacactcgtgcccggttctggcgtgtgatttgagt
gcagacaaggaggttctttcaggcgatctggagggtctggtaaagctgtggaagctgtca
cgtgatgacacggttgagcagtacgaggttggaaagcacaagggagcagttttgggcgcg
attttcctcaagcatcgtatggttacctgttctacagacacaacgatttccatttttgat
ggcggacacaagatccggaatttcaagggccatacggctgctgtgaacgtggtttgtgga
ggacaaaacgacgagctgatctacagtggctcggatgatggcagtattggcatttgggat
cctcgagagaaggatagcgagtcacgtgtgattgaaacgaattatcccgtgattgccgtg
gctacagatggacacgagacggtgtggagtgcaggagttgatgacgtgatcagcagatgg
gacttgcggatgaatcagcagattgatttccagggcgctgatggacacacagatatcgtc
acgagtctgagctacaatcacaaccggttggcaagccattctcacgacaataccgtgcga
gtttgggacacaaagccgtttatggctgacgaaaagtcgagagaactgttgtgtttgact
gatgcccctaacggtattgagcaggcgactctcaaggcgaaatggtctagtgatggagag
catatcatttccgggtctgctgatcgaacagtggtgatttggaagggcgatactggtcgt
ctggtgcgaaaggtcggtggtcatagtggctgtgttaatgatgtggctatggttgacaaa
tggtatgttagtgccagttcagatggtacgttggtggtgtcgaccctctag
DBGET
integrated database retrieval system
